PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022962.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 354aa    MW: 38968.3 Da    PI: 6.3191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022962.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.6e-193381355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  HL.SW.v1.0.G022962.1 33 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 81
                          67******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-343295IPR001471AP2/ERF domain
PROSITE profilePS5103220.7193289IPR001471AP2/ERF domain
CDDcd000181.07E-303288No hitNo description
PRINTSPR003675.2E-83344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-293389IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-213390IPR016177DNA-binding domain
PfamPF008478.2E-123581IPR001471AP2/ERF domain
PRINTSPR003675.2E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNNIIKSNKK AMKKQGSTAA AAAQGAQGEG ARFLGVRRRP WGRYAAEIRD PSTKERHWLG  60
TFDTAEEAAL AYDRAARSMR GSRARTNFVY SDMPAGSALT TILSPDDPNT NLNFSSSAAI  120
NHHHNQQQQQ QMNNNITMAD HHDRHHHHQQ QQLLMMNNIM AADKQLDLIN NSHNQQYYDY  180
FSSSSNSSPH EHYFHSYYDQ EKEKDQPPPP PPAAAAAAIM FNSSSDNNNY YNGNYSAAAA  240
AAAASAELPP FPESEIISYY DHEDEQRRHS ISTTSASSCG FFGNSNHNIM GTNELLDYNY  300
SNNELYGSNA THSPLFSTMP SVSDAGLIPY SLDPFDLAAA AASSTASSSS FFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-192488371Ethylene-responsive transcription factor ERF096
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5AG292e-93A0A2P5AG29_PARAD; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-26ERF family protein