PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | CO-like | ||||||||
Protein Properties | Length: 493aa MW: 53668.4 Da PI: 5.6019 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.9 | 4.8e-09 | 25 | 68 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C + H+ H++v HL.SW.v1.0.G022860.1 25 ARACDSCVKKRARWYCAADDAFLCQSCDHSVHSAnslarrHERV 68 578*****************************657788888876 PP | |||||||
2 | CCT | 68.1 | 2.4e-23 | 440 | 483 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ HL.SW.v1.0.G022860.1 440 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 483 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.135 | 23 | 70 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.9E-9 | 23 | 70 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-7 | 25 | 68 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.40E-10 | 26 | 70 | No hit | No description |
Pfam | PF06203 | 6.8E-18 | 440 | 482 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.083 | 440 | 482 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MSTATTTSIY NNKKSSNGVV GGKTARACDS CVKKRARWYC AADDAFLCQS CDHSVHSANS 60 LARRHERVRL KTSSSRSPPP PLKLAAASDE LPSWHRGFTR KARTPRNGSH ASSIRGHKLS 120 NKPNGSSSGS SGTVPNPFSL VPEYCNGDET SNDENEEQLL YRVPIYDPFV AGQLCNSPAE 180 VSKSTSFGAN NDINGTSPDE EENNNNTLQG LLFPAQEMDD LAEFAADVES LLGHGLENDA 240 CFGMEGLGFV DSKDVRETTT TDPECASGEG RAVKVEEDED EAMGGSFEDM MREPFQLNLD 300 DYDESPAPSY GEEDAKVGLG MTVEVEIKGD NGNDANDVVK KNSSSTMMLI KKKKKKKQIL 360 LRLDYEAVST AWATQGGSPW TTGDRPDFDP DACLPECMMS SSTDAAQIIN QSNNYLSNGS 420 GVVIGGLINA AAAALGDEGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV 480 KRSSYVPSTI TN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 350 | 356 | KKKKKKK |
2 | 450 | 466 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103762.1 | 1e-143 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A2P5FDR2 | 0.0 | A0A2P5FDR2_TREOI; Zinc finger-domain containing protein | ||||
STRING | XP_010103762.1 | 1e-143 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 4e-81 | B-box type zinc finger protein with CCT domain |