PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 420aa MW: 47828 Da PI: 6.4409 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 155 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H HL.SW.v1.0.G022838.1 155 YVCKVCGRKCKTNLDLKKHFKQlH 178 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 5.0E-7 | 73 | 143 | IPR029060 | PIN domain-like |
SMART | SM00355 | 0.0061 | 155 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.928 | 155 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 178 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 7.15E-12 | 167 | 309 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 5.0E-7 | 240 | 308 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MNTISVCNAS TSGCATLPPV PSLFFRRDTD HLQSLKPKLS FRPISFKWPI IRACASASEI 60 DMFKNKQGVY APKQKKVVIL WDLDNKPPRG PPYEAAMALK QVAQQFGEVV DASAYANRHA 120 FIHLPQWVME QRRERKHLDI LERKGVVKPP DTETYVCKVC GRKCKTNLDL KKHFKQLHER 180 ERQKKLNRMR SLKGKKRQRF KERYIAGNHK YNEAARSLLT PKVGYGLASE LRRAGVFVKT 240 VEDKPQAADW ALKKQMQHSM SRGIDWLFLV SDDSDFSEML RRARDANLGT VVVGDWDRAL 300 GRHADVWVPW TGVENGEIKE KDLVPRSRRS SELFDGEDND DDGLFSAGDF DQGLEIDSRL 360 DKVVDELVVS SSQFNGVRIS AFSEGEEEND DWVAEEMGED YLLGDTDDDE DSEDEDGIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008357383.2 | 0.0 | uncharacterized protein LOC103421127 | ||||
TrEMBL | A0A2P5CVL4 | 0.0 | A0A2P5CVL4_PARAD; Zinc finger, C2H2 domain containing protein | ||||
STRING | XP_008357383.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-171 | C2H2-like zinc finger protein |