PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022838.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 420aa    MW: 47828 Da    PI: 6.4409
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022838.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014155178123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y+C+ Cg+ ++++ +Lk+H +  H
  HL.SW.v1.0.G022838.1 155 YVCKVCGRKCKTNLDLKKHFKQlH 178
                           9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10105.0E-773143IPR029060PIN domain-like
SMARTSM003550.0061155178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928155183IPR007087Zinc finger, C2H2
PROSITE patternPS000280157178IPR007087Zinc finger, C2H2
CDDcd061677.15E-12167309No hitNo description
Gene3DG3DSA:3.40.50.10105.0E-7240308IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNTISVCNAS TSGCATLPPV PSLFFRRDTD HLQSLKPKLS FRPISFKWPI IRACASASEI  60
DMFKNKQGVY APKQKKVVIL WDLDNKPPRG PPYEAAMALK QVAQQFGEVV DASAYANRHA  120
FIHLPQWVME QRRERKHLDI LERKGVVKPP DTETYVCKVC GRKCKTNLDL KKHFKQLHER  180
ERQKKLNRMR SLKGKKRQRF KERYIAGNHK YNEAARSLLT PKVGYGLASE LRRAGVFVKT  240
VEDKPQAADW ALKKQMQHSM SRGIDWLFLV SDDSDFSEML RRARDANLGT VVVGDWDRAL  300
GRHADVWVPW TGVENGEIKE KDLVPRSRRS SELFDGEDND DDGLFSAGDF DQGLEIDSRL  360
DKVVDELVVS SSQFNGVRIS AFSEGEEEND DWVAEEMGED YLLGDTDDDE DSEDEDGIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357383.20.0uncharacterized protein LOC103421127
TrEMBLA0A2P5CVL40.0A0A2P5CVL4_PARAD; Zinc finger, C2H2 domain containing protein
STRINGXP_008357383.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-171C2H2-like zinc finger protein