PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 47563.5 Da PI: 5.9552 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.3 | 6.6e-14 | 206 | 257 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ HL.SW.v1.0.G022805.1 206 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 257 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.23E-12 | 204 | 259 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-16 | 205 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.777 | 205 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-11 | 206 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-14 | 206 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-9 | 211 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MERLQGPINP CFFSEHMDME CLEQGLTTSS GSLRFEEEEA CVFTQGLEER MPFLQMLQSV 60 DSSSFLPLKD PSFQTLLRLQ HMKKPWEADI DVSYHHSVPQ LDTQQLQGLE FESCVTNEIV 120 ELHSPIKSET KDVQYQHSTT SGPEQAGASS ECNQERQPNN VEQQCVNNPQ TTFKQTQNSK 180 FPPVGRERRK RKRTRPAKNK EEVESQRMTH IAVERNRRRQ MNDHLNVLRS LMPTSYIQRG 240 DQASIVGGAI DFVKELEQLF QSLEAQKRMR KAEGQRSTAS NAVENSVSSS SSSSSSAVAM 300 PSHGLYMSLS QFRLGPDQEE NIISLGDEVR AENKSEAADI VVTVIQTHVN LKIQCPRRPG 360 QLLKAIVALE DLRLAILHLN ITSSQATVLY SFNLKIEDEC KLGSADEIAG AVHQIFRFID 420 AT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 192 | RRKRKR |
2 | 206 | 217 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888894.1 | 1e-178 | transcription factor bHLH67 isoform X2 | ||||
TrEMBL | A0A2P5FHC3 | 0.0 | A0A2P5FHC3_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | EMJ19239 | 1e-165 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6894 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 2e-84 | bHLH family protein |