PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022548.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 571aa    MW: 60761.6 Da    PI: 5.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022548.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09386434355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  HL.SW.v1.0.G022548.1 386 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 434
                           58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-17381451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-11381438No hitNo description
PROSITE profilePS5088815.485383433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16384451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6386434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10389439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDMGEKNKFE LDNKNEDPMN YSSGMSSDWR FGGSNLANTS MGLVQAANSM VIGKGDLIGS  60
SSCSSAPVVD SFVSTLWDHT ANPQNLGFCD MNIQNNASSL NALGIGKGSP ASLRNGVDRT  120
LDMCWNPSSP MLKGGLFLPN MPGMIPQSLS QLPTDSAFIE RAARFSCFNG GNFSDMVNPF  180
AIQDSVNLYS RGGGVVQGGQ DVLAGNGLKQ AISGVHSQKG QLNMSEASKD TSLTAELGGT  240
EGSPLKNERK SESLARSHDE AKQCVGGSGN DSDEAEFSNG VGAGLEEPCM LEGTVGGSEP  300
SAKGLGSKKR KRNGQDSDPD QAKGASHQHG ESTKDYNAEQ HQKGDQNPST ANNKATGKHG  360
KQGSQGSDPP KEEYIHVRAR RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA  420
VMLDEIINYV QSLQRQVEFL SMKLATVNPR LEFNIEGLLA KDMLQSRVCS SSALAFSPDV  480
HMPYPTLQPP SQGLIQASLA GIGGSSDVLR RAISSQLTPM SGGFKEPTQI PNVWEDELNN  540
VVQMSFGTRS SPNSQEADGS MPTGQMKVEL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091656.10.0transcription factor bHLH49
TrEMBLA0A2P5DTY30.0A0A2P5DTY3_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010091656.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-127bHLH family protein