PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TCP | ||||||||
Protein Properties | Length: 427aa MW: 46965.3 Da PI: 6.2335 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104 | 2.5e-32 | 57 | 198 | 3 | 105 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssas 71 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ + HL.SW.v1.0.G022486.1 57 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLpmppsgnfslltprgleansA----- 140 78*************************************************************444444444444443332221..... PP TCP 72 ec.eaesssssasnsssg...........................................kaaksaakskksqksaa 105 + ++s+s+ + + k+ a HL.SW.v1.0.G022486.1 141 -AiA-ANSQSN------EhqegfkinndsnewdcssrlpgsnfwsnsttnnsssdvlwrgkS------------KEVA 198 .111.111111......112223344444557666666666665555543333333333220............2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.229 | 58 | 116 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.6E-30 | 58 | 226 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MIENSKDSSS DFPPREDDQG NEGKITKASC SIPNNTSSTP WLRLKDPRIV RVSRVFGGKD 60 RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLNAAK DEIDELPPLP 120 MPPSGNFSLL TPRGLEANSA AIAANSQSNE HQEGFKINND SNEWDCSSRL PGSNFWSNST 180 TNNSSSDVLW RGKSKEVARN PSAAANGEKE NWRSSRINEV EKEEVEEEEE EGEANNDDEG 240 PNNLFQRQNV TSHPFFPGMM NNAIPNGYRW EPQNYPLSFL GGGGGGGGGG SSHGFTSQTD 300 HLQNLNVMSL QSSTLSLSTG SQFLVCPPGN TITQTYFPTS TTASHHPHQH HQAAEIDPRL 360 QVHHFHQMFS SNPQSGLLPN DMQPNNSNNT QPMRAAPLHF STTSSGSNKL VHFSPNDTRG 420 SQQNKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 63 | 117 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089649.1 | 1e-119 | transcription factor TCP13 | ||||
TrEMBL | A0A2P5DK13 | 1e-154 | A0A2P5DK13_TREOI; TCP transcription factor | ||||
STRING | XP_010089649.1 | 1e-119 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-47 | plastid transcription factor 1 |