PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022261.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 213aa    MW: 23873.3 Da    PI: 4.3711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022261.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.2e-06167189729
                           HHHHHHHHHHHHHHHHHHCTSCC CS
                   HLH   7 erErrRRdriNsafeeLrellPk 29 
                           + ErrRR+r+++++  Lr+l+P+
  HL.SW.v1.0.G022261.1 167 ISERRRRSRMKEKLYALRSLVPN 189
                           67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-8151193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.959160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-6162191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-5162192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGINNNINDL ELHDLIGDSN FDQFIDLIRG ENDDPLVSFG CDDLINGSNN FVHNNIDRHF  60
LGGTDHPLND DNNHVFGFNA SPLVSSEPNS LSFIDTLEIM PEYFEGEIMN NVDMVGNGDD  120
DDDDEENDGN DSSGTTTTTT PTPTPKPNPN PNASSKRPKV DRSRTLISER RRRSRMKEKL  180
YALRSLVPNI TKVHIIVYFL STTYRILYIL VK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031455.11e-45transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A2P5FTK35e-48A0A2P5FTK3_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010111848.18e-45(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-06FER-like regulator of iron uptake