PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022196.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 479aa    MW: 50806 Da    PI: 8.83
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022196.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-115379127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          ++ ++C +++rtG+C yG+rC+++H++
  HL.SW.v1.0.G022196.1 53 PGVPNCVYYMRTGYCGYGNRCRYNHPR 79
                          5789*********************96 PP
2zf-CCCH40.16.3e-13100124327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C+++++tGtCk+G++CkF+H++
  HL.SW.v1.0.G022196.1 100 EPVCQYYLKTGTCKFGASCKFHHPK 124
                           789********************96 PP
3zf-CCCH38.32.2e-12144170127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++++tG+Ck+G +CkF+H++
  HL.SW.v1.0.G022196.1 144 PGEAECSYYLKTGQCKFGLTCKFHHPQ 170
                           5789*********************97 PP
4zf-CCCH35.31.9e-11303327327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C++++rtG Ck+G++C+++H++
  HL.SW.v1.0.G022196.1 303 EPECQYYLRTGDCKFGSSCRYHHPR 327
                           799********************96 PP
5zf-CCCH35.51.7e-11348372226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           ++ +C f++++G+Ck+G++CkF H+
  HL.SW.v1.0.G022196.1 348 GMQPCTFYLQNGQCKFGATCKFDHP 372
                           7889********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.085280IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-65279IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-95479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-75681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-55879IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67697125IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-797124IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5102124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549143171IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6143170IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10145170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4149169IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187300328IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9303327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6305328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5306328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375346374IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-7346373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5348374IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9348372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5350371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MELYGRSPAR NGSNPGQQPE WSPDVGETGL EESMWQLGLT GGSGGGESYP ERPGVPNCVY  60
YMRTGYCGYG NRCRYNHPRD RAAVAAAVRA TGEYPERVGE PVCQYYLKTG TCKFGASCKF  120
HHPKHGGGSL SQAPLNVYGY PLRPGEAECS YYLKTGQCKF GLTCKFHHPQ PAGASVTASA  180
PQFYPPVQSP SVPMPDQFGG PSTSLRVARP PLVPGSYVQG AYGPVLFPHG VVPLPGWNPY  240
SAPVSPVLSP GAQPTVGGAS VYGVTHLPSS TASLARPYSS LPSSIGASSS SPKEQAFPER  300
AGEPECQYYL RTGDCKFGSS CRYHHPRDRA VPRTNCLLSP MGLPLRPGMQ PCTFYLQNGQ  360
CKFGATCKFD HPTMRYSPSA SSLIDMPVTP YPVGSLLATL APSSTSSELR PELISGSKKE  420
SYSARIPSSG NTSTSSVGLI FSQTGPVSLS DVQLSSQSSV ALSSSRSTRQ GGEVRRSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112757.10.0zinc finger CCCH domain-containing protein 32
RefseqXP_024032024.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLW9SLY60.0W9SLY6_9ROSA; Zinc finger CCCH domain-containing protein 32
STRINGXP_010112757.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein