PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 353aa MW: 39541.6 Da PI: 5.7361 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.6 | 2.8e-07 | 148 | 168 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H HL.SW.v1.0.G022185.1 148 CEICGKGFKRDANLRMHMRAH 168 *******************99 PP | |||||||
2 | zf-C2H2 | 16.2 | 3e-05 | 234 | 257 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+Lk+H++++ HL.SW.v1.0.G022185.1 234 YSCNRCNkKKFSVLSDLKNHMKNC 257 99********************98 PP | |||||||
3 | zf-C2H2 | 11.5 | 0.00091 | 265 | 281 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ HL.SW.v1.0.G022185.1 265 TCGTTFSRKDKLFGHMA 281 6**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.81E-6 | 143 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-6 | 146 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0035 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.362 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 196 | 229 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 50 | 234 | 255 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 220 | 262 | 286 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MSFPGDSIHF SAECSGEFTQ QDPLTNSNPQ VHLASLFSVQ ERMESVHRFL SESVNVNASL 60 SFDQMTMVSS EIFSAIQRVI DDGSALIALS QTPIAAAASD FSKPVVDVKT ESFEEETRKE 120 EEDDGGDGDF EIVELDSVEL LAEHIHLCEI CGKGFKRDAN LRMHMRAHGN QYKTPEALSK 180 PVERILEPNR KCPVRFSCPH VGCNRNKAHK KFRPLKSSIC AKNHFRRSHC PKMYSCNRCN 240 KKKFSVLSDL KNHMKNCGEV RWRCTCGTTF SRKDKLFGHM ALFEGHMPAV LDDGDPVEKG 300 KKPLNGREED ESMDDGMSFR DDDELFEGLL DGFGFPIEGF SLQDVLGSPS EF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087609.1 | 1e-129 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2P5EZH2 | 1e-178 | A0A2P5EZH2_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_010087609.1 | 1e-129 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 6e-71 | C2H2 family protein |