PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022185.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 353aa    MW: 39541.6 Da    PI: 5.7361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022185.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.62.8e-07148168323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C++Cgk F+r  nL+ H+r H
  HL.SW.v1.0.G022185.1 148 CEICGKGFKRDANLRMHMRAH 168
                           *******************99 PP

2zf-C2H216.23e-05234257123
                           EEETTTT.EEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                           y+C+ C+ k Fs  s+Lk+H++++
  HL.SW.v1.0.G022185.1 234 YSCNRCNkKKFSVLSDLKNHMKNC 257
                           99********************98 PP

3zf-C2H211.50.00091265281521
                           TTTEEESSHHHHHHHHH CS
               zf-C2H2   5 dCgksFsrksnLkrHir 21 
                            Cg++Fsrk+ L  H+ 
  HL.SW.v1.0.G022185.1 265 TCGTTFSRKDKLFGHMA 281
                           6**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.81E-6143169No hitNo description
Gene3DG3DSA:3.30.160.604.2E-6146168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0035146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.362146173IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SMARTSM00355140196229IPR015880Zinc finger, C2H2-like
SMARTSM0035550234255IPR015880Zinc finger, C2H2-like
SMARTSM00355220262286IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSFPGDSIHF SAECSGEFTQ QDPLTNSNPQ VHLASLFSVQ ERMESVHRFL SESVNVNASL  60
SFDQMTMVSS EIFSAIQRVI DDGSALIALS QTPIAAAASD FSKPVVDVKT ESFEEETRKE  120
EEDDGGDGDF EIVELDSVEL LAEHIHLCEI CGKGFKRDAN LRMHMRAHGN QYKTPEALSK  180
PVERILEPNR KCPVRFSCPH VGCNRNKAHK KFRPLKSSIC AKNHFRRSHC PKMYSCNRCN  240
KKKFSVLSDL KNHMKNCGEV RWRCTCGTTF SRKDKLFGHM ALFEGHMPAV LDDGDPVEKG  300
KKPLNGREED ESMDDGMSFR DDDELFEGLL DGFGFPIEGF SLQDVLGSPS EF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087609.11e-129protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A2P5EZH21e-178A0A2P5EZH2_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010087609.11e-129(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-71C2H2 family protein