PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 361aa MW: 39499.3 Da PI: 4.8327 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 145 | 194 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 s y+GVr++k +g+W+AeIrd + + +r +lg++ t+eeA ka++a r+++e HL.SW.v1.0.G022164.1 145 SPYRGVRQRK-WGKWAAEIRDpF-----KgARLWLGTYNTPEEASKAYEAKRLEFE 194 68*******9.**********55.....45***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-17 | 145 | 194 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.336 | 146 | 207 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-19 | 146 | 209 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-13 | 147 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 147 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.61E-23 | 147 | 193 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-22 | 147 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 169 | 185 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MSADSVFDLV VIGAPSKKLC LARLVNFVSM RLRPRRELEH LIFPKMPEPR KQSSKSMRKI 60 RVICSDPYAT DSSSSEDEGF SRKASKKCKR IVREIQVPLF PKPTKTLESE SSVQDSNYGV 120 GGKTLNPKRR VLAKTTSGTK KPSSSPYRGV RQRKWGKWAA EIRDPFKGAR LWLGTYNTPE 180 EASKAYEAKR LEFEAMAATT APTVKFNSSS SSASVSASAS ASAVVSASSE DSESVVSHNS 240 PSSVLELETS VSDSKPDACA DTTGKNPNIS EDETPDLGFM DEVLASFPPF EQDMSFGPEL 300 DTLFLDDIDD LLNGFNNIDD IQIFGVDDKD SSNLPDCDFD DLGKDDISFW MEGALNIPCL 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-11 | 144 | 211 | 12 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023885153.1 | 1e-103 | ethylene-responsive transcription factor ERF119-like | ||||
TrEMBL | A0A2P5DZ65 | 1e-149 | A0A2P5DZ65_PARAD; AP2/ERF transcription factor | ||||
STRING | XP_010103775.1 | 1e-102 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 5e-34 | ERF family protein |