PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G022150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26042.7 Da PI: 6.9567 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.1 | 5.4e-42 | 87 | 186 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r+da+ss+vyeA+ar+rdPvyG++g i +lq+q+++ HL.SW.v1.0.G022150.1 87 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQEIPESQRTDAVSSMVYEANARIRDPVYGCAGAICQLQKQVSE 175 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+ +la++++e HL.SW.v1.0.G022150.1 176 LQGQLAKAQAE 186 *******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.898 | 86 | 187 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-42 | 87 | 184 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEFKPKAQTP PRLTVPTPFS LSVPLQYSPN NSSSSSPTLN SSQLSSPASS FPSPSPPTSQ 60 SSPTSTTNVN PTPPPPPPPP PAIVMSPCAA CKILRRRCVD KCVLAPYFPP TEPLKFTIAH 120 RVFGASNIIK FLQEIPESQR TDAVSSMVYE ANARIRDPVY GCAGAICQLQ KQVSELQGQL 180 AKAQAELVNM QCQQANLIAL ICMDVTQLQD PNSQQQPPYV DTSCFLDDNT LGTTWEPLWT 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 86 | 198 | 10 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 86 | 198 | 10 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108453.1 | 1e-114 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 9e-74 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | W9RZL7 | 1e-113 | W9RZL7_9ROSA; Uncharacterized protein | ||||
STRING | XP_010108453.1 | 1e-114 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-74 | LOB domain-containing protein 1 |