PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G022049.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WRKY

Protein Properties

Length: 175aa MW: 19946.9 Da PI: 5.9473

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G022049.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.2	1.2e-31	113	171	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ gCpvkk+ver++edp +v++tYeg Hnh+ HL.SW.v1.0.G022049.1 113 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCPVKKRVERDREDPMYVITTYEGVHNHQ 171 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	99	171	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-28	106	171	IPR003657	WRKY domain
PROSITE profile	PS50811	30.285	108	173	IPR003657	WRKY domain
SMART	SM00774	2.3E-37	113	172	IPR003657	WRKY domain
Pfam	PF03106	7.9E-25	114	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MMSGSPSSNS NTKFKSHMDQ SPENDNMVDD SSLDQFSEFL MFEEWPDEYR HQEVSPVSQP 60 TPNTVTYATD EFGGSSSHLG GHNTTGENVQ GGRGRMEVRE RVAFKTKSEI EILDDGFKWR 120 KYGKKMVKNS PNPRNYYRCS VDGCPVKKRV ERDREDPMYV ITTYEGVHNH QSSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	103	170	7	74	Probable WRKY transcription factor 4
2lex_A	2e-25	103	170	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	3e-35	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	3e-35	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220527.1	1e-64	PREDICTED: probable WRKY transcription factor 50 isoform X1
Swissprot	Q8VWQ5	1e-45	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A2P5DEQ1	8e-70	A0A2P5DEQ1_PARAD; WRKY domain containing protein
STRING	XP_008220527.1	4e-64	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	3e-46	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]