PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021654.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 397aa    MW: 42967.9 Da    PI: 8.1843
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021654.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.43.8e-106787222
                          --SS-EEEEEEE--TT-SS-E CS
                  WRKY  2 dDgynWrKYGqKevkgsefpr 22
                          +D ++WrKYGqK++kgs++pr
  HL.SW.v1.0.G021654.1 67 SDSWAWRKYGQKPIKGSPYPR 87
                          69******************9 PP
2WRKY95.53.8e-30178236259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY  +Hnh+
  HL.SW.v1.0.G021654.1 178 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLIITYACDHNHP 236
                           69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-95987IPR003657WRKY domain
SuperFamilySSF1182901.12E-76288IPR003657WRKY domain
SMARTSM007742.2E-466122IPR003657WRKY domain
PROSITE profilePS5081112.2666787IPR003657WRKY domain
PfamPF031068.4E-66888IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-31170238IPR003657WRKY domain
SuperFamilySSF1182901.7E-25173238IPR003657WRKY domain
SMARTSM007742.5E-35177237IPR003657WRKY domain
PROSITE profilePS5081132.145178238IPR003657WRKY domain
PfamPF031063.5E-25179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDRRLDYTEP MSENGPDSPS SGDDMNKTTS FEPSPKKSKR GVQKRVVSVP ISDVEGSKNK  60
GEAYPPSDSW AWRKYGQKPI KGSPYPRLLP QKNIKRNPRL QIHSRDRPLL IMDRRLDYTE  120
PMSENGPDSP SSGDDMNKTT SFEPSPKKSK RGVQKRVVSV PISDVEGSKN KGEAYPPSDS  180
WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRV DPTMLIITYA CDHNHPIPTK  240
SHLSNTAAAS AAAAAAASAA AARSTSATPS SSGAEDVPAK APVGAIAVFS GQSELVSDGS  300
AALLSGCGYR HQWFDDDDVV STAIVLESPF MEGNGAYMDD DISMAFSSVS SEDESLFADL  360
GELPECSVVF RRRIVEPEDQ NRRCSLSAVP CCGSTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21155239680Disease resistance protein RRS1
5w3x_D2e-21155239680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9833330.0HG983333.1 Humulus lupulus mRNA for WRKY transcription factor (Wrky3 gene), clone 3323.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102121.11e-122probable WRKY transcription factor 69
SwissprotQ93WV53e-75WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLA0A0D6DR540.0A0A0D6DR54_HUMLU; WRKY transcription factor
STRINGXP_010102121.11e-121(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-75WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]