PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021644.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 225aa    MW: 25418.2 Da    PI: 5.1947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021644.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.7e-303088259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                          +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+ +Hnh+
  HL.SW.v1.0.G021644.1 30 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTCSHNHP 88
                          699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-311890IPR003657WRKY domain
SuperFamilySSF1182903.79E-252790IPR003657WRKY domain
SMARTSM007747.1E-342989IPR003657WRKY domain
PROSITE profilePS5081130.8363090IPR003657WRKY domain
PfamPF031066.5E-253188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
RKVERKVVTV RIDTTNNNNV GKAKNEGPPS DFWSWRKYGQ KPIKGSPYPR GYYRCSTSKG  60
CSAKKQVERS KTDASVLIIT YTCSHNHPGP NSDMIINSSN TTDQELNITR HDHDQQVITK  120
QKEVSEGAVD SFHYIESPQK DIVIDFKEDP FLGEQLEPVR CLSPTLPKSK PSSLEEEEDH  180
EDDKENDFFD ELEELPTTTS FSSFMRSSST FLLSNEITIP LVPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2130901779Disease resistance protein RRS1
5w3x_D2e-2130901779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021805196.12e-64probable WRKY transcription factor 69 isoform X1
TrEMBLA0A2P5CL013e-71A0A2P5CL01_PARAD; WRKY domain containing protein
STRINGEMJ025646e-64(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-36WRKY DNA-binding protein 69