PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G021604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 28888.7 Da PI: 8.2027 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 74 | 120 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+l+P + +K++Ka+ L +++ +k+L HL.SW.v1.0.G021604.1 74 KNHSEAERRRRERINAHLATLRDLVPCN-----EKMDKATLLAEVISQVKQL 120 58*************************9.....8************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.164 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-10 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.69E-4 | 74 | 123 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-14 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-14 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-12 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MASYSFSNAS YGSDYSSLFD PFSHTGGGGF GGVSKGGSVP HSLVLDSKRG ELVKTPARVG 60 KKGVSEAKAM AALKNHSEAE RRRRERINAH LATLRDLVPC NEKMDKATLL AEVISQVKQL 120 KKKAAESSKG LLIPADDDEV QVERLDDNGT ENDGNLLFKA SVCCSYRVEL LSDVRQALEG 180 LPLKMIKTEI STLGDRLKIS FVFTCCKEKN NDDDAETCRT LVNSVHETLS SVLDKASALA 240 EYSPRTTLLC KRRRISYLDS SSSSC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 84 | ERRRRE |
2 | 250 | 254 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103039.1 | 1e-109 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A2P5DKK4 | 1e-141 | A0A2P5DKK4_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010103039.1 | 1e-108 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 4e-32 | bHLH family protein |