PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021604.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 266aa    MW: 28888.7 Da    PI: 8.2027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021604.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-1274120354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+e+ErrRR+riN  +++Lr+l+P +     +K++Ka+ L +++  +k+L
  HL.SW.v1.0.G021604.1  74 KNHSEAERRRRERINAHLATLRDLVPCN-----EKMDKATLLAEVISQVKQL 120
                           58*************************9.....8************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.16471120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1074120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-474123No hitNo description
SuperFamilySSF474595.63E-1475127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-1475126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASYSFSNAS YGSDYSSLFD PFSHTGGGGF GGVSKGGSVP HSLVLDSKRG ELVKTPARVG  60
KKGVSEAKAM AALKNHSEAE RRRRERINAH LATLRDLVPC NEKMDKATLL AEVISQVKQL  120
KKKAAESSKG LLIPADDDEV QVERLDDNGT ENDGNLLFKA SVCCSYRVEL LSDVRQALEG  180
LPLKMIKTEI STLGDRLKIS FVFTCCKEKN NDDDAETCRT LVNSVHETLS SVLDKASALA  240
EYSPRTTLLC KRRRISYLDS SSSSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERRRRE
2250254KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103039.11e-109putative transcription factor bHLH107
TrEMBLA0A2P5DKK41e-141A0A2P5DKK4_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010103039.11e-108(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.14e-32bHLH family protein