PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021535.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 227aa    MW: 25957.6 Da    PI: 9.7965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021535.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.65.9e-051231621155
                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +R +++ +++  L++l+ +      +K + a++L++A  YIk  q
  HL.SW.v1.0.G021535.1 123 KRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLIQ 162
                           7999**************99.....9***************9776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.22112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-9122170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-6123170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEPILNLDND KQKRVEDYSF PFQPSSLVTY QQAFPDVIDN SSHQQSILLG KKILAPQLEV  60
KDFLAIQNRR KRPTEDNDML FARSSTWELL GDKRKKRNKV TSNDQEALLS GGMQEHKLLM  120
PAKRSQKLSD KITALQKLVS PYGKTDTASV LQEASLYIKL IQEQIQNLFR MMSSPCDNVR  180
GSQSQNYQQE SGKRWLDLRS RGLCLAPISF TKTVALEDPI DKYSRY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024927065.16e-66actin-depolymerizing factor 1-like isoform X5
TrEMBLA0A2P5DPT18e-95A0A2P5DPT1_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRINGXP_010096644.13e-58(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05170.19e-22bHLH family protein