PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G021480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21861.1 Da PI: 7.498 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.5e-15 | 54 | 101 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 + GVr++ +g+WvAeIr p + r +r +lg+f ta eAa a++ a+ k + HL.SW.v1.0.G021480.1 54 FIGVRQRT-WGKWVAEIRKP---N-RgARLWLGTFNTAIEAAGAYDDAAWKQY 101 78***999.**********8...3.35********************996655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.46E-25 | 52 | 110 | No hit | No description |
SMART | SM00380 | 2.5E-26 | 53 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.796 | 53 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-19 | 53 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-27 | 54 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-10 | 54 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-8 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-8 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEYYKEEESN NSINNNNNNA INSNCNNDKK ATMERSRKKR MKGKGGPENS KCTFIGVRQR 60 TWGKWVAEIR KPNRGARLWL GTFNTAIEAA GAYDDAAWKQ YGPRAKLNLP GRHHHYPQYS 120 STSSGADFES AGLFSRAVSA ESGEFGGLDG FTWPQLGYRE DDDYMELMMN SSVQLSFGGE 180 GECLFSHLNG DVSLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-15 | 56 | 112 | 5 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-15 | 54 | 112 | 6 | 65 | ATERF1 |
3gcc_A | 2e-15 | 54 | 112 | 6 | 65 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102188.1 | 1e-44 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q9LQZ2 | 2e-36 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A2P5FYW5 | 2e-55 | A0A2P5FYW5_TREOI; AP2/ERF domain containing protein | ||||
STRING | XP_010102188.1 | 5e-44 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-26 | ERF family protein |
Publications ? help Back to Top | |||
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