PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021461.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 395aa    MW: 42661.5 Da    PI: 6.1309
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021461.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-062364439
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          r+C+++     + +C+ ++ +lC+ C   +H        H++
  HL.SW.v1.0.G021461.1 23 RVCDTCRAAACTVYCRADSAYLCAGCDARIHAAnrvasrHER 64
                          79******99*********************55567777765 PP
2zf-B_box28.92.4e-0965109341
              zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                            ++C+ +e+ ++ + C+ +   lC++C   +H+       H +vp
  HL.SW.v1.0.G021461.1  65 VWVCEACERAPAAFICKADAASLCATCDADIHSAnplarrHHRVP 109
                           689*****************************6688999977776 PP
3CCT70.34.9e-24325368144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  HL.SW.v1.0.G021461.1 325 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 368
                           9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2242067IPR000315B-box-type zinc finger
SMARTSM003367.3E-92067IPR000315B-box-type zinc finger
CDDcd000211.22E-72367No hitNo description
PROSITE profilePS5011910.93663110IPR000315B-box-type zinc finger
PfamPF006434.7E-764109IPR000315B-box-type zinc finger
CDDcd000212.27E-866110No hitNo description
SMARTSM003362.0E-968110IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648325367IPR010402CCT domain
PfamPF062037.8E-18325367IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MMKDETTGAG GGGGGAGTKA WARVCDTCRA AACTVYCRAD SAYLCAGCDA RIHAANRVAS  60
RHERVWVCEA CERAPAAFIC KADAASLCAT CDADIHSANP LARRHHRVPV LPISGCLHGP  120
PATDRVGSTL VGGTGDGFLS HEGNEGIDDI QNPEDEDENE AASWLLLNPV KNGQNQGNGF  180
LFGGEVDEYL DLVEYNSGVD NQFGDHQYGQ TNNQMPQSYG VSQQKSYGGD SVVPVQCVDG  240
KSQLQHQQNQ TGFQLGLDFE SSKSGYSYNG SISHSVSVSS MDVSVVPDST MSDISISHPR  300
PPKGTIDLFS GPPIQMPTQL TPMDREARVL RYREKKKTRK FEKTIRYASR KAYAETRPRI  360
KGRFAKRTDV EVEVDQMFST ALMTEAGYGI VPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759198.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-153COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2P5BAM20.0A0A2P5BAM2_TREOI; Zinc finger-domain containing protein
STRINGGorai.008G059900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-119CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]