PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G021095.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22858.1 Da PI: 7.7032 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.7 | 4.3e-29 | 2 | 100 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C ++Cvl+ ++ p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++ HL.SW.v1.0.G021095.1 2 SCNGCRVLRKGCGESCVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGN 90 6**************************************************************************************** PP DUF260 85 qqleqlkael 94 ++++q+++e+ HL.SW.v1.0.G021095.1 91 WHVCQAAVET 100 ******9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.607 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSCNGCRVLR KGCGESCVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQAAVET ILCGGVLRPM QGGLLMQKLD 120 ESSDMLAVAG DTSSWPSSAY RYFPSLPSIY DPRQEQYYSG ARGSSSIFPM TEKLVWRDSI 180 SRSSEESVMT KSFGIGDRKE QKLLNLFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092590.1 | 6e-88 | LOB domain-containing protein 39 | ||||
Swissprot | Q9SN23 | 5e-62 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2P5EZY5 | 1e-113 | A0A2P5EZY5_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010092590.1 | 2e-87 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-64 | LOB domain-containing protein 38 |