PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021006.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SRS
Protein Properties Length: 384aa    MW: 40534 Da    PI: 7.4824
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021006.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.24.4e-681783215154
                DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 
                           ++sCqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa+krrerqqq++++ss + +   ++++kr r+   +++  +ss++l+ 
  HL.SW.v1.0.G021006.1 178 GVSCQDCGNQAKKDCVHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQQQQLSSLQHQ--PHQQPKRLRD---NNALMISSSRLQ- 260
                           579**********************************************999988655433..4444444444...455555555554. PP

                DUF702  94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           +++++ +e+ ++P+evss+a+frcv+vss++d+++++aYqtav+igGhvfkGiLyd+G+e+
  HL.SW.v1.0.G021006.1 261 TNTSSGMEVGNFPAEVSSQALFRCVKVSSMEDNDDQYAYQTAVNIGGHVFKGILYDHGPES 321
                           4556799****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.3E-65178320IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.5E-28180222IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.7E-27272319IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAGFFSLGSS STSTPASAAA AATTRRGSTS AAQEEDNDNH NQTTTHTGIP GHPETFFWYN  60
VKQHSNNNNS NNHDHQTNTT ATFELWQQQQ QQAALLHLQT IPTRSHHHHH QDLYSSAAAL  120
GVGPSSYRSV GGGGGGGGAS ITVDSSDEHQ SSSARFMMMR SSSSGGGGAG GGGVVGAGVS  180
CQDCGNQAKK DCVHMRCRTC CKSRGYDCQT HVKSTWVPAS KRRERQQQQQ QLSSLQHQPH  240
QQPKRLRDNN ALMISSSRLQ TNTSSGMEVG NFPAEVSSQA LFRCVKVSSM EDNDDQYAYQ  300
TAVNIGGHVF KGILYDHGPE SNYNMGGETS SGGGGGGVAA TASTAAGATE ASPSGAFDPS  360
SLYQQPPLNT YIAGTQFFLP PRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113475.12e-98protein SHI RELATED SEQUENCE 1
TrEMBLA0A2P5DE091e-140A0A2P5DE09_PARAD; Protein SHI RELATED SEQUENCE
STRINGcassava4.1_032269m1e-100(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-60SHI-related sequence 5