PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020988.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRF
Protein Properties Length: 384aa    MW: 43528.4 Da    PI: 8.4824
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020988.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC789e-2578121144
                   WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                           d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e
  HL.SW.v1.0.G020988.1  78 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 121
                           79***************************************987 PP
2QLQ57.25e-20943236
                   QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                          +FTa+Q+q+L++Q+l++Ky++++ P+Pp+Ll+ ++
  HL.SW.v1.0.G020988.1  9 PFTASQWQELEHQALIFKYMVSGIPIPPDLLFTLK 43
                          8*****************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.935944IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-15941IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.15678122IPR014977WRC domain
PfamPF088796.8E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MMSGKSRFPF TASQWQELEH QALIFKYMVS GIPIPPDLLF TLKRSYLDSA VLPSKLFPHH  60
SQHVGWNCFQ MGLGRKIDPE PGRCRRTDGK KWRCSKEAFP DSKYCERHMH RGKNRSRKPV  120
EVLKTTGTNS NLSTPSTHTT TLVSSTKNLS NNSLSSLSSL TSEGQNRHLH PSCYLNPHLD  180
HQQPFSVYNH SSSSSRPPGI GLSSQDSNTS LLFDSGSYSN ADLRKSRYVY GLKEEVDEHS  240
FFSEEPSRTH VRDLSMDDTW QLTPLTMSCS SSSSKQRSCS GLQSEHSYLQ LQNSTHGYKQ  300
HSKQDQHHCD LMRNDVKMER KEATQKTIHF IDEWPVKEKD SWLELDDKSS NSGSVSTTQL  360
SISIPTSSYD FPLFNTCRTH NGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932189.11e-152growth-regulating factor 5-like isoform X7
TrEMBLA0A2P5BXX40.0A0A2P5BXX4_PARAD; Growth-regulating factor
STRINGGorai.009G035200.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-55growth-regulating factor 5