PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G020922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | G2-like | ||||||||
Protein Properties | Length: 626aa MW: 69351.8 Da PI: 6.0415 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89 | 4.2e-28 | 373 | 427 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++ HL.SW.v1.0.G020922.1 373 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 427 5689*****************.********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 7.12E-12 | 42 | 159 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.1E-11 | 42 | 162 | No hit | No description |
PROSITE profile | PS50110 | 16.633 | 45 | 161 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.5E-5 | 46 | 156 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.67E-7 | 47 | 161 | No hit | No description |
PROSITE profile | PS51294 | 15.347 | 370 | 429 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 371 | 429 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-18 | 372 | 430 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 373 | 428 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-8 | 376 | 425 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MTYTRDGTWR QSAKLHGGLR NDAKPAMVCT ANDLQEWKDF PKGLRVLVLD QDSTSATDIR 60 SNLEAMDYVV STFCNESEAM LAFSSKPEKT WQALMEHGQV NTGNENGTFK FLETAKELPI 120 IMTSTVHCLS TMMKCIALGA VEFLPKPLSE DKLRNIWQHV AFNAGGGALS KPLKPVKESI 180 ASMLHLKVEK EEPDTKISIE MENSSGIKEN NQEQSAGSDK YPAPSTPQLK QGARLLDDGD 240 CQDQTNCSAE KENGEQDGES KSVETTYGDS VAEDALLIGE PEMQAKSMVK EEEDSVDGSK 300 SESECHMSPH QHNDDSPNNV MSPHLNNDDS SNNVIFPHLH NDDSPNNVIG GVNNPSKASA 360 LTNSSVSKSN RKKMKVDWTP ELHKKFVHAV EQLGVDQAIP SRILELMKVE GLTRHNVASH 420 LQKYRMHKRH ILPKEEDRRW PRPRDPVQKN YYPQQPIMAY PSYHSNHALP VAPVYSMWGQ 480 PGNHPASVQM WPPPAYPPWQ SAESWQWKPF SGMHADAWGC PVMPPPQGPY ASYPQVNVSG 540 FHNTGVINNV CSMPQNTFDI HPAEEVIDKV VKEAINKPWL PLPLGLKPPS TDSVLSELSR 600 QGISNIPPHL GSSDSFCHGT GSQHE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-16 | 378 | 427 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026471.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024026472.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024026473.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-133 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A2P5BSP5 | 0.0 | A0A2P5BSP5_TREOI; Two-component response regulator | ||||
STRING | XP_010104373.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-131 | ARR-B family protein |
Publications ? help Back to Top | |||
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