PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020922.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 626aa    MW: 69351.8 Da    PI: 6.0415
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020922.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.2e-28373427156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  HL.SW.v1.0.G020922.1 373 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 427
                           5689*****************.********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.12E-1242159IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-1142162No hitNo description
PROSITE profilePS5011016.63345161IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-546156IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.67E-747161No hitNo description
PROSITE profilePS5129415.347370429IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-27371429IPR009057Homeodomain-like
SuperFamilySSF466892.33E-18372430IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24373428IPR006447Myb domain, plants
PfamPF002492.3E-8376425IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MTYTRDGTWR QSAKLHGGLR NDAKPAMVCT ANDLQEWKDF PKGLRVLVLD QDSTSATDIR  60
SNLEAMDYVV STFCNESEAM LAFSSKPEKT WQALMEHGQV NTGNENGTFK FLETAKELPI  120
IMTSTVHCLS TMMKCIALGA VEFLPKPLSE DKLRNIWQHV AFNAGGGALS KPLKPVKESI  180
ASMLHLKVEK EEPDTKISIE MENSSGIKEN NQEQSAGSDK YPAPSTPQLK QGARLLDDGD  240
CQDQTNCSAE KENGEQDGES KSVETTYGDS VAEDALLIGE PEMQAKSMVK EEEDSVDGSK  300
SESECHMSPH QHNDDSPNNV MSPHLNNDDS SNNVIFPHLH NDDSPNNVIG GVNNPSKASA  360
LTNSSVSKSN RKKMKVDWTP ELHKKFVHAV EQLGVDQAIP SRILELMKVE GLTRHNVASH  420
LQKYRMHKRH ILPKEEDRRW PRPRDPVQKN YYPQQPIMAY PSYHSNHALP VAPVYSMWGQ  480
PGNHPASVQM WPPPAYPPWQ SAESWQWKPF SGMHADAWGC PVMPPPQGPY ASYPQVNVSG  540
FHNTGVINNV CSMPQNTFDI HPAEEVIDKV VKEAINKPWL PLPLGLKPPS TDSVLSELSR  600
QGISNIPPHL GSSDSFCHGT GSQHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16378427655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026471.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024026472.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024026473.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-133APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2P5BSP50.0A0A2P5BSP5_TREOI; Two-component response regulator
STRINGXP_010104373.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-131ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]