PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G020861.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 181aa MW: 21204 Da PI: 7.5713

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G020861.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.9e-20	23	75	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le Fe+++++ e++ +LA++lgL+ rqV vWFqNrRa++k HL.SW.v1.0.G020861.1 23 KRKLTEEQVNLLEMNFESEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 75 4589************************************************9 PP
2	HD-ZIP_I/II	124.8	3.9e-40	22	113	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kr+l++eqv+lLE++Fe+e+kLe+erK +la+eLgl+prqvavWFqnrRAR+ktk+lE++y++Lk+ +d+++++++rLe+ev +L+e+ HL.SW.v1.0.G020861.1 22 RKRKLTEEQVNLLEMNFESEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKTKKLEEEYSSLKKLHDSVVHDKCRLESEVLKLKEQ 110 8***************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 +++ HL.SW.v1.0.G020861.1 111 MSD 113 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.184	17	77	IPR001356	Homeobox domain
SMART	SM00389	6.8E-18	20	81	IPR001356	Homeobox domain
CDD	cd00086	1.20E-15	22	78	No hit	No description
Pfam	PF00046	1.0E-17	23	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.08E-18	23	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-21	24	84	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	48	57	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	57	73	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
ETKAKRRRKK NKSAKEESAL ARKRKLTEEQ VNLLEMNFES EHKLESERKD RLASELGLDP 60 RQVAVWFQNR RARWKTKKLE EEYSSLKKLH DSVVHDKCRL ESEVLKLKEQ MSDAEKKIQR 120 LTERVDCVSS NSPSSSLSME AAMDPPFLGE FGVVEEYDDV FYVPDNSYIN HGMEWMNLYM 180 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	23	RRRKKNKSAKEESALARKR
2	7	24	RKKNKSAKEESALARKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022752124.1	5e-81	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	3e-69	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A2P5BC59	2e-89	A0A2P5BC59_PARAD; Octamer-binding transcription factor
STRING	XP_010099829.1	2e-78	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	8e-58	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]