PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 338aa    MW: 37851.5 Da    PI: 4.2807
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020850.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1995148356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+++++ +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  HL.SW.v1.0.G020850.1  95 KKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 148
                           556899***********************************************9 PP

2HD-ZIP_I/II131.24e-4295184291
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kkrrls +qv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y++lk++ e+L+ke+++L++e
  HL.SW.v1.0.G020850.1  95 KKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYDVLQASYNSLKADYESLRKETDKLKAE 183
                           9**************************************************************************************98 PP

           HD-ZIP_I/II  91 l 91 
                           +
  HL.SW.v1.0.G020850.1 184 V 184
                           7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-1983152IPR009057Homeodomain-like
PROSITE profilePS5007116.98990150IPR001356Homeobox domain
SMARTSM003893.4E-1992154IPR001356Homeobox domain
CDDcd000861.07E-1793151No hitNo description
PfamPF000461.1E-1695148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-1997157IPR009057Homeodomain-like
PRINTSPR000319.8E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000319.8E-6130146IPR000047Helix-turn-helix motif
PfamPF021835.2E-15150191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAGGRVYGGS TGSSSLSVLL QNQRGSSASE PLDSLFLSGS CNSSSSPSFL GSRSMMSFED  60
VNGGNGSNKS FFRSFGSDEI GIDDDFDEYF HQPGKKRRLS VDQVQFLEKS FEVENKLEPE  120
RKVQLAKDLG LQPRQVAIWF QNRRARWKTK QMEKDYDVLQ ASYNSLKADY ESLRKETDKL  180
KAEVLVLSDE LLKREKESSN SEVCDNSNKL CDQEPVEKPI AESASEGEIS KASTVVCQLE  240
DISSVRSDIF DSDSPRFTDG VRSNPLMEPG DTSYVFEADQ SDLSQDEEDN HLINRTFLPS  300
SSYIFPKLED VDYSDPPETS CNFGYPVEEP AFWTWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894305.11e-162homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2P5EKJ80.0A0A2P5EKJ8_TREOI; Octamer-binding transcription factor
STRINGEOY217131e-154(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-44homeobox 1