PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G020850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 338aa MW: 37851.5 Da PI: 4.2807 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 95 | 148 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k HL.SW.v1.0.G020850.1 95 KKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 148 556899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 4e-42 | 95 | 184 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrls +qv++LE+sFe e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y++lk++ e+L+ke+++L++e HL.SW.v1.0.G020850.1 95 KKRRLSVDQVQFLEKSFEVENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYDVLQASYNSLKADYESLRKETDKLKAE 183 9**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + HL.SW.v1.0.G020850.1 184 V 184 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.18E-19 | 83 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 90 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-19 | 92 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-17 | 93 | 151 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 95 | 148 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 97 | 157 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.8E-6 | 121 | 130 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.8E-6 | 130 | 146 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.2E-15 | 150 | 191 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MAGGRVYGGS TGSSSLSVLL QNQRGSSASE PLDSLFLSGS CNSSSSPSFL GSRSMMSFED 60 VNGGNGSNKS FFRSFGSDEI GIDDDFDEYF HQPGKKRRLS VDQVQFLEKS FEVENKLEPE 120 RKVQLAKDLG LQPRQVAIWF QNRRARWKTK QMEKDYDVLQ ASYNSLKADY ESLRKETDKL 180 KAEVLVLSDE LLKREKESSN SEVCDNSNKL CDQEPVEKPI AESASEGEIS KASTVVCQLE 240 DISSVRSDIF DSDSPRFTDG VRSNPLMEPG DTSYVFEADQ SDLSQDEEDN HLINRTFLPS 300 SSYIFPKLED VDYSDPPETS CNFGYPVEEP AFWTWSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 150 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023894305.1 | 1e-162 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A2P5EKJ8 | 0.0 | A0A2P5EKJ8_TREOI; Octamer-binding transcription factor | ||||
STRING | EOY21713 | 1e-154 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-44 | homeobox 1 |