PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G020849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 381aa MW: 42859.5 Da PI: 4.9527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 44 | 6.8e-14 | 17 | 116 | 10 | 127 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 td+e+ L+k ++g + ++ +vi++v+ +++ P++Lp e+ w++ +++ +k ++ gyW++ g+ +++s +++ HL.SW.v1.0.G020849.1 17 TDKEIF-MCLEKMMNGFPPPC-NVISDVNPFEHMPENLP------ERIWFYIMSKVEKD---------ASFGYWRTEGEACKIFS-NSS 87 788888.66999999999999.99**************9......35576666665544.........467**************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 + k+tL f++g+ap+g kt+W m y HL.SW.v1.0.G020849.1 88 ITAWKNTLEFFEGQAPHGYKTNWKMLKYW 116 9************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.436 | 8 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.89E-19 | 17 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MCPPATSPSH DIGIFCTDKE IFMCLEKMMN GFPPPCNVIS DVNPFEHMPE NLPERIWFYI 60 MSKVEKDASF GYWRTEGEAC KIFSNSSITA WKNTLEFFEG QAPHGYKTNW KMLKYWITWN 120 VLSKDNNVKE SLLCNVFFVD EQKSYHGMPK KMARADMASQ STQPYVQRSE NCTGQSPANK 180 PQTSEDNEIG NRESVPAILV DIVPDIDYLS GGDFLELADL QIPLSPSSSS DSICVSMSSG 240 ECFNALDLLA DIESEKPLDL VQNNAGSKLS VFVSSTPTKM VMHPAWTGTC KSHSEELNDK 300 SMTGSAISRK IPDEKVLKNP IENQKPELKI EGTSSTCRNR HESLGGNKAE EEEEEEEEDK 360 REAHGRKKKL RKKYLCFMPF * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027738.1 | 1e-133 | NAC domain-containing protein 7 | ||||
Refseq | XP_024027739.1 | 1e-133 | NAC domain-containing protein 7 | ||||
TrEMBL | A0A2P5AIV1 | 1e-159 | A0A2P5AIV1_PARAD; NAC domain containing protein | ||||
STRING | XP_010106034.1 | 1e-121 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10588 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 2e-11 | NAC domain containing protein 28 |