PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020800.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 347aa    MW: 38056.3 Da    PI: 8.1631
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020800.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-18200254256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  HL.SW.v1.0.G020800.1 200 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 254
                           778899***********************************************98 PP
2HD-ZIP_I/II128.43e-41200290192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr 
  HL.SW.v1.0.G020800.1 200 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKELQELR- 287
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 elk 92 
                           +lk
  HL.SW.v1.0.G020800.1 288 ALK 290
                           555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.3E-5116152IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.3E-17184250IPR009057Homeodomain-like
SuperFamilySSF466892.91E-18189257IPR009057Homeodomain-like
PROSITE profilePS5007117.216196256IPR001356Homeobox domain
SMARTSM003894.5E-16198260IPR001356Homeobox domain
PfamPF000462.2E-15200254IPR001356Homeobox domain
CDDcd000868.80E-16200257No hitNo description
PROSITE patternPS000270231254IPR017970Homeobox, conserved site
SMARTSM003403.0E-26256299IPR003106Leucine zipper, homeobox-associated
PfamPF021837.3E-11256290IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MELALSLGET TPTTPFSFLH KAQKITNNST NLNNNQAELG FCMSLGNSAF SSRSSSSSDQ  60
DHQDKKDHDL SRPVSSSSDL QLPLQLDLLP SAPVPRSQTT SQLRFPWLTD NCTIIGPGKG  120
FDVNRLPAVG AVPEETEEGI TISSPNSTLS SFHMDFCVRS SSSGGVRTSN KRDHSNNNME  180
CETERASSRA SDDEENGSTR KKLRLSKEQS AFLEESFKEH STLNPKQKVA LAKQLNLRPR  240
QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTDENRRLQ KELQELRALK TSQPFYMQLP  300
ATTLTMCPSC ERVATAGAGT AAGSAANSGN PSPHRFSHGQ VGKGGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204TRKKLRL
2248256RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111372.11e-144homeobox-leucine zipper protein HOX11
SwissprotP466651e-102HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2P5B6T21e-168A0A2P5B6T2_PARAD; Octamer-binding transcription factor
STRINGXP_010111372.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-87homeobox from Arabidopsis thaliana