PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020759.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 465aa    MW: 50538.4 Da    PI: 10.1603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020759.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-213379349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           +n+sn qvtfskRr g++KKA+EL++LC+ae a+i+fs+  k++ +
  HL.SW.v1.0.G020759.1 33 MDNESNLQVTFSKRRSGLFKKASELCTLCGAELAIIVFSPGRKVFSF 79
                          589*************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.3522383IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-292382IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-2524100IPR002100Transcription factor, MADS-box
CDDcd002656.90E-342498No hitNo description
PRINTSPR004043.6E-172545IPR002100Transcription factor, MADS-box
PfamPF003192.2E-233379IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-174560IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-176081IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAMEMNNNNN INENNDPNRR VSRGRQKVAM VKMDNESNLQ VTFSKRRSGL FKKASELCTL  60
CGAELAIIVF SPGRKVFSFG HPSVELVIDR FLNPQNYRTT PQANSGTLQL IEAHRNANVR  120
ELNQQLSHVT GQLDHERKRN NELKKARKAR VSLHWWEAPA EALSDLRHLE QLKSAMELLR  180
RATTQQADRL LIQTTANANS LLPPNFNTMN VNTPSFYGSV TNNAGGGGGG GNGQQQHNNY  240
DHYCDTKNKN INDDKKNVGF DGGVANNNTN PSASTGKTGT DTPQLQAITS GGGSVNHHVN  300
MPYLQAAIAS GGGNVNHINL AQIQAIPSGG TINMQVVKSS STTTTTGGGG GNVMSHINFS  360
PMSHMSPHMQ PNTCVSTFNH FNMSPAMPHV QPKTSSAPNL VNHVNMSPMQ ANNNTSVNHV  420
MNQLPMLPQS LPQSSQLLLQ QPNSQGTHHH MMFSNNGGFG HGFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-59AGAMOUS-like 62