PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020531.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 232aa    MW: 26897.1 Da    PI: 8.2179
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020531.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1968122256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +k++t+t++qle Le+ F++  ++  e++ +L+++lgL+ rq+ vWFqNrRa++k
  HL.SW.v1.0.G020531.1  68 KKKRTLTNNQLESLERSFQEGIKLEPERKMKLSRELGLESRQIAVWFQNRRARWK 122
                           67789*************************************************9 PP
2HD-ZIP_I/II111.55.5e-3668158191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kkr l+++q+++LE+sF+e  kLeperK++l+reLgl+ rq+avWFqnrRAR+k++q+E+ yeaLk+ yd++++e+++L++ev++L++
  HL.SW.v1.0.G020531.1  68 KKKRTLTNNQLESLERSFQEGIKLEPERKMKLSRELGLESRQIAVWFQNRRARWKARQMERSYEALKHDYDHISKEKQMLQEEVRKLKR 156
                           599************************************************************************************97 PP

           HD-ZIP_I/II  90 el 91 
                            +
  HL.SW.v1.0.G020531.1 157 FI 158
                           65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1951125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-2053125IPR009057Homeodomain-like
PROSITE profilePS5007117.68664124IPR001356Homeobox domain
SMARTSM003893.2E-1667128IPR001356Homeobox domain
PfamPF000467.8E-1768122IPR001356Homeobox domain
CDDcd000861.01E-1468125No hitNo description
PRINTSPR000314.7E-595104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000314.7E-5104120IPR000047Helix-turn-helix motif
PfamPF021834.0E-8126155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDWNGNARHS VSRTECSYGF PFHNDYESYC HGMEMKHQPI LSDTAQGLNI GPSMERDSPS  60
SYGCSQEKKK RTLTNNQLES LERSFQEGIK LEPERKMKLS RELGLESRQI AVWFQNRRAR  120
WKARQMERSY EALKHDYDHI SKEKQMLQEE VRKLKRFIRD NAVGSKQVAM MISGNTNCMI  180
SGEDMAETTS DAINIIRSNK SQGTNHHQCN PFFNAEEYNN PISPPYWGFF P*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021810960.15e-86putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-41ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P5FVQ04e-81A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
STRINGXP_008241330.19e-85(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.18e-44homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]