PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25289.6 Da    PI: 5.0971
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020471.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-172576556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +++++q+++Le+ F+ ++++ +e++ +LA++lg++ rqV vW+qN+Ra+++
  HL.SW.v1.0.G020471.1 25 KRLNEHQVRVLERNFNYEKKLEQEHKHQLADQLGIPARQVAVWYQNKRARWR 76
                          5689***********************************************9 PP

2HD-ZIP_I/II102.83e-3323113292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +k+rl+++qv++LE++F+ e+kLe+e+K++la +Lg+ +rqvavW+qn+RAR++t+ lE+d+++L++++d+  +e++rLe ev  Lr e
  HL.SW.v1.0.G020471.1  23 NKKRLNEHQVRVLERNFNYEKKLEQEHKHQLADQLGIPARQVAVWYQNKRARWRTQSLEVDCTTLQHRLDTALAEKRRLEGEVLVLRGE 111
                           69***********************************************************************************9988 PP

           HD-ZIP_I/II  91 lk 92 
                           l+
  HL.SW.v1.0.G020471.1 112 LD 113
                           86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-151379IPR009057Homeodomain-like
PROSITE profilePS5007115.4831878IPR001356Homeobox domain
SMARTSM003895.7E-112082IPR001356Homeobox domain
CDDcd000863.04E-112479No hitNo description
PfamPF000464.8E-152576IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-172581IPR009057Homeodomain-like
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDQIQNQKGS SSSSTKVVAQ NMNKKRLNEH QVRVLERNFN YEKKLEQEHK HQLADQLGIP  60
ARQVAVWYQN KRARWRTQSL EVDCTTLQHR LDTALAEKRR LEGEVLVLRG ELDMACQALQ  120
LTDNNITIYY DNTTYYDNIN NNIDSSYCTA TTTTSTTATT DQEQGQEGDG RSYSSFSDNP  180
QYDHHHVINN YDHLLDHIDD DQFLQIDHDF FSSLIDW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.19e-24homeobox protein 52