PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G020471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25289.6 Da PI: 5.0971 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1.1e-17 | 25 | 76 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++q+++Le+ F+ ++++ +e++ +LA++lg++ rqV vW+qN+Ra+++ HL.SW.v1.0.G020471.1 25 KRLNEHQVRVLERNFNYEKKLEQEHKHQLADQLGIPARQVAVWYQNKRARWR 76 5689***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 102.8 | 3e-33 | 23 | 113 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +k+rl+++qv++LE++F+ e+kLe+e+K++la +Lg+ +rqvavW+qn+RAR++t+ lE+d+++L++++d+ +e++rLe ev Lr e HL.SW.v1.0.G020471.1 23 NKKRLNEHQVRVLERNFNYEKKLEQEHKHQLADQLGIPARQVAVWYQNKRARWRTQSLEVDCTTLQHRLDTALAEKRRLEGEVLVLRGE 111 69***********************************************************************************9988 PP HD-ZIP_I/II 91 lk 92 l+ HL.SW.v1.0.G020471.1 112 LD 113 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.43E-15 | 13 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.483 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-11 | 20 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.04E-11 | 24 | 79 | No hit | No description |
Pfam | PF00046 | 4.8E-15 | 25 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-17 | 25 | 81 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 53 | 76 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDQIQNQKGS SSSSTKVVAQ NMNKKRLNEH QVRVLERNFN YEKKLEQEHK HQLADQLGIP 60 ARQVAVWYQN KRARWRTQSL EVDCTTLQHR LDTALAEKRR LEGEVLVLRG ELDMACQALQ 120 LTDNNITIYY DNTTYYDNIN NNIDSSYCTA TTTTSTTATT DQEQGQEGDG RSYSSFSDNP 180 QYDHHHVINN YDHLLDHIDD DQFLQIDHDF FSSLIDW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 9e-24 | homeobox protein 52 |