PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020345.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 367aa    MW: 40623.9 Da    PI: 7.2585
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020345.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.7e-32172225255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  HL.SW.v1.0.G020345.1 172 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 225
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15169226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-28170226IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23172225IPR006447Myb domain, plants
PfamPF002492.4E-7173224IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLPNQSTKMR SSSSSLPDLS LQISPPSIPV PDCLTEANNN EVVLLLSDRS STTTDSGSST  60
TGSDLSHENG LYNNNPLEKT TNCYSSLGGG SNHHEPTLSL GFETKDNHLP PPVLLHHQHH  120
HHLPRSFNSN SNNININNHH HFHSHHQPQI YGREFKRNPR SISGVKRSVR APRMRWTTTL  180
HAHFVHAVQL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD KAAGQEQTDL  240
GLNQRTGINI VNDDHVDGVL SSEILAQPHS GLPSSHVGPW SSLPVESPNE RSHSSHENGS  300
TVPYDFRENG AKVEKKRSDS LEERVECSSL SSSNMCLNLE FTLGRPSWQK DYAHHDSSNE  360
LTLLKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16173227458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097641.11e-121probable transcription factor KAN4 isoform X2
TrEMBLA0A2P5FN271e-155A0A2P5FN27_TREOI; KANADI transcription factor
STRINGXP_010097641.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-55G2-like family protein