PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020024.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 687aa    MW: 74535.2 Da    PI: 6.5077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020024.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30298357159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  HL.SW.v1.0.G020024.1 298 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSILITTYEGTHNHP 357
                           58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-31283359IPR003657WRKY domain
SuperFamilySSF1182901.96E-27291359IPR003657WRKY domain
PROSITE profilePS5081128.461293359IPR003657WRKY domain
SMARTSM007749.1E-37298358IPR003657WRKY domain
PfamPF031066.0E-27299357IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MEPLISGKSA AHGAFVVKEE IKRVESDGDH DDLQYHSSKI GNERAVWEEN DDTKRSSPKQ  60
DLSCEKQQQI PRTTTDHVER SSTSIEPDSM AACASIIPNK EQDDQLESTR VELGEVREEN  120
QRLKIYLSQI MKDYQTLQMQ FNKLDHFQQE AAKRSTHNNE NNYQEIEESD LISLSLGSFC  180
NPKSNNYIKE EKNKNISEVG DHDHEEGLSL GLEYNKYHDQ GSKSVGTETD QGEPVVSNPS  240
AGSSFEESLN KEEAGETWPP SKVLKTAMKR SVEDEVSQQN PVKKARVCVR IRCDTPTMND  300
GCQWRKYGQK IAKGNPCPRA YYRCTVAPSC PVRKQVQRCA DDMSILITTY EGTHNHPLPV  360
SATAMASTTS AAASMLLAGS TSSSNPGASG GQHPSATTTA AELHRFSTLD SSKWNNKQTT  420
FYLPNSSTTS YSSYSSSHPT ITLDLTSSNS SPLLNKFSTT TTPSPNYPHH HHSVYPSSSS  480
LSFGTPSNNN INSSDQYSNS SNLSWINNNG FLSYGTSQVP YNTRNQLVGT LAPGKLNLSN  540
SHSSTTSATH VQNYMQKNSP ATTTTSTDHS STIAAATKAI TADPAFQSAL AAALTSIISG  600
AGGGGGDNNN NNIDLAQKFT WGSGTSSTDH HQQQQQLQSS TSVPKGLNAG NSMFLSPNSL  660
SFSASKSTAT ASASPHSDHH TREQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-212983591777Probable WRKY transcription factor 4
2lex_A3e-212983591777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086565.11e-158probable WRKY transcription factor 72
TrEMBLA0A2P5F7C80.0A0A2P5F7C8_TREOI; WRKY domain containing protein
STRINGXP_010086565.11e-158(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-66WRKY DNA-binding protein 72