PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G019779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TCP | ||||||||
Protein Properties | Length: 194aa MW: 20999.8 Da PI: 7.6852 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.8 | 8.2e-34 | 83 | 154 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +k+ +++++h kv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ HL.SW.v1.0.G019779.1 83 VAKRASTKDRHRKVEGRGRRIRIPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM 154 5799************************************************************98888444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-28 | 88 | 160 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.553 | 89 | 143 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAMIQNHEVQ EEKGRKVAEL KINGGGEAEQ NDVVAEEQTN QTLSLNEAAP TSSSVEPKEE 60 PEERSSADAL QLVPLAVQVT GPVAKRASTK DRHRKVEGRG RRIRIPAACA ARIFQLTREL 120 GHKSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL KIPTATPDPE PDDPILKKKR 180 KRPPFQSQPG WLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 182 | LKKKRKRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899326.1 | 8e-67 | transcription factor TCP9 | ||||
Swissprot | O64647 | 2e-55 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A2P5AXE1 | 3e-75 | A0A2P5AXE1_PARAD; TCP transcription factor | ||||
STRING | evm.model.supercontig_18.176 | 5e-63 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-44 | TCP family protein |