PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G019346.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 212aa MW: 24847.2 Da PI: 7.9091

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G019346.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.2e-27	45	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eY+++vGF +r+++ ++s+ +++i +r++ C+k+g++ + +++ + r++r+ +r gCka++ vk +k+gkw vt++e++H+H+l HL.SW.v1.0.G019346.1 45 EFYDEYSRRVGFVMRIDQCRRSEVDKRILSRRLSCNKQGFSIKARDEVGHVRKQRSRSREGCKAMMLVKVNKSGKWAVTRFEKDHTHPL 133 6*****************************************99999*************************************9 PP FAR1 90 a 90 + HL.SW.v1.0.G019346.1 134 V 134 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-25	45	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEMNSDVETG TAETKAERVL NAHEEVPALE PCIGMEFESE EAAKEFYDEY SRRVGFVMRI 60 DQCRRSEVDK RILSRRLSCN KQGFSIKARD EVGHVRKQRS RSREGCKAMM LVKVNKSGKW 120 AVTRFEKDHT HPLVVSDRPS WSPFDSKDRK IEELTMELEH QDQLCESYRE LLLTFLKNIE 180 EQTEMLSTRI RHVVNNIREV ETEGQKRPRK R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021685934.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2P5DPB4	1e-113	A0A2P5DPB4_PARAD; FHY3/FAR1 family
STRING	VIT_00s0174g00130.t01	6e-97	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-65	FAR1 family protein