PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019287.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 271aa    MW: 31078.9 Da    PI: 5.1658
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019287.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.5e-204395456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           ++f++eq++ Le++Fe++ ++  +++ +LA++lgL+ rqV +WFqNrRa++k
  HL.SW.v1.0.G019287.1 43 QRRFSDEQIKLLESMFESETKLEPRKKIQLARELGLQPRQVAIWFQNRRARWK 95
                          568*************************************************9 PP

2HD-ZIP_I/II123.21.3e-3942133293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           ++rr+s+eq+klLE++Fe+e+kLep++K +lareLglqprqva+WFqnrRAR+k+kq+E+d++ L+++yd+l+++ e+L++e+e+L+ +
  HL.SW.v1.0.G019287.1  42 NQRRFSDEQIKLLESMFESETKLEPRKKIQLARELGLQPRQVAIWFQNRRARWKSKQIEQDFKNLRAQYDSLVSQFESLKEEKESLALQ 130
                           589***********************************************************************************999 PP

           HD-ZIP_I/II  91 lke 93 
                           l++
  HL.SW.v1.0.G019287.1 131 LQK 133
                           986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.8E-1632101IPR001356Homeobox domain
SuperFamilySSF466891.04E-183598IPR009057Homeodomain-like
PROSITE profilePS5007117.6213797IPR001356Homeobox domain
CDDcd000867.87E-164398No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2044103IPR009057Homeodomain-like
PfamPF000463.9E-174495IPR001356Homeobox domain
PRINTSPR000318.1E-66877IPR000047Helix-turn-helix motif
PROSITE patternPS0002707295IPR017970Homeobox, conserved site
PRINTSPR000318.1E-67793IPR000047Helix-turn-helix motif
PfamPF021831.7E-1297138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESGEFPSSE NYFQSITSLE QPPSPPSVAK KKKKNKNNNN YNQRRFSDEQ IKLLESMFES  60
ETKLEPRKKI QLARELGLQP RQVAIWFQNR RARWKSKQIE QDFKNLRAQY DSLVSQFESL  120
KEEKESLALQ LQKLKDLLLS KPNDEIKEDK DFEEEKYRNT NSKGETKTSL EEELEDRGGG  180
VLMTTTTTNN IENLGQQGYE LLSTNQQQVD SSLTSLEMAK FLELARELEL GDIYLLLTAS  240
NNAAAIVLLP IKFHNFKANP DSQSFTCVLA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12834AKKKKKN
28997RRARWKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878685.13e-61homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2P5E6N41e-78A0A2P5E6N4_TREOI; Aldo/keto reductase
STRINGEMJ195682e-57(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.25e-35homeobox 7