PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G019287.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 271aa MW: 31078.9 Da PI: 5.1658 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.5e-20 | 43 | 95 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe++ ++ +++ +LA++lgL+ rqV +WFqNrRa++k HL.SW.v1.0.G019287.1 43 QRRFSDEQIKLLESMFESETKLEPRKKIQLARELGLQPRQVAIWFQNRRARWK 95 568*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.2 | 1.3e-39 | 42 | 133 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ++rr+s+eq+klLE++Fe+e+kLep++K +lareLglqprqva+WFqnrRAR+k+kq+E+d++ L+++yd+l+++ e+L++e+e+L+ + HL.SW.v1.0.G019287.1 42 NQRRFSDEQIKLLESMFESETKLEPRKKIQLARELGLQPRQVAIWFQNRRARWKSKQIEQDFKNLRAQYDSLVSQFESLKEEKESLALQ 130 589***********************************************************************************999 PP HD-ZIP_I/II 91 lke 93 l++ HL.SW.v1.0.G019287.1 131 LQK 133 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 6.8E-16 | 32 | 101 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.04E-18 | 35 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.621 | 37 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.87E-16 | 43 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-20 | 44 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-17 | 44 | 95 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.1E-6 | 68 | 77 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 72 | 95 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-6 | 77 | 93 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-12 | 97 | 138 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MESGEFPSSE NYFQSITSLE QPPSPPSVAK KKKKNKNNNN YNQRRFSDEQ IKLLESMFES 60 ETKLEPRKKI QLARELGLQP RQVAIWFQNR RARWKSKQIE QDFKNLRAQY DSLVSQFESL 120 KEEKESLALQ LQKLKDLLLS KPNDEIKEDK DFEEEKYRNT NSKGETKTSL EEELEDRGGG 180 VLMTTTTTNN IENLGQQGYE LLSTNQQQVD SSLTSLEMAK FLELARELEL GDIYLLLTAS 240 NNAAAIVLLP IKFHNFKANP DSQSFTCVLA * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 34 | AKKKKKN |
2 | 89 | 97 | RRARWKSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015878685.1 | 3e-61 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A2P5E6N4 | 1e-78 | A0A2P5E6N4_TREOI; Aldo/keto reductase | ||||
STRING | EMJ19568 | 2e-57 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 5e-35 | homeobox 7 |