PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G019161.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 177aa MW: 18979.7 Da PI: 9.9435 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.2e-31 | 38 | 95 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++++itY+g H+h+ HL.SW.v1.0.G019161.1 38 ADGHRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTNAIIITYKGVHDHD 95 6********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-32 | 22 | 97 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.031 | 32 | 97 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 33 | 97 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-35 | 37 | 96 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-24 | 39 | 94 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSMAVLKKSN VEYAGSLLKS SKKPKFVVHA AGDVGISADG HRWRKYGQKM VKGNPHPRNY 60 YRCTSAGCPV RKHIETAVDN TNAIIITYKG VHDHDMPVPK KRHGPPSAPL VAAAAPASMN 120 SLQLKKSDAT PNQVSSTQWS VDNEGELTGE ALDLGGEKAM ESARTLLSIG FEIKPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-28 | 25 | 97 | 2 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892651.1 | 1e-101 | probable WRKY transcription factor 32 | ||||
Swissprot | P59583 | 2e-82 | WRK32_ARATH; Probable WRKY transcription factor 32 | ||||
TrEMBL | A0A2P5FNQ3 | 1e-101 | A0A2P5FNQ3_TREOI; WRKY domain containing protein | ||||
STRING | XP_007154886.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5198 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-75 | WRKY DNA-binding protein 32 |