PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G019033.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

CAMTA

Protein Properties

Length: 880aa MW: 98934.8 Da PI: 7.275

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G019033.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.8	6.1e-51	29	143	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +rwl+++ei+a+L n++ ++++ ++ + pk g+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++ p HL.SW.v1.0.G019033.1 29 APSRWLRPNEIYAMLSNYKYFTIHVKPMNLPKGGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEEKIHVYYAHGQDCP 117 479************************************************************************************ PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 tf rrcywlL+++le+ivlvhy+e++ HL.SW.v1.0.G019033.1 118 TFVRRCYWLLDKSLEHIVLVHYRETQ 143 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.191	22	148	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-70	25	143	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.0E-45	29	141	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	5.32E-14	358	445	IPR014756	Immunoglobulin E-set
Pfam	PF01833	6.0E-4	359	444	IPR002909	IPT domain
PROSITE profile	PS50297	13.337	555	598	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.2E-12	555	629	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.82E-13	555	628	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.03E-10	555	625	No hit	No description
Pfam	PF00023	1.5E-5	566	597	IPR002110	Ankyrin repeat
SMART	SM00248	7.1E-6	566	595	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.888	566	598	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.1E-10	655	780	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.584	714	740	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7.4	729	751	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.474	730	759	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.01	752	774	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.651	753	777	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	9.5E-4	757	774	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 880 aa Download sequence Send to blast
MEGGQLVDSN IHGFHTLQDL DVPTIMAEAP SRWLRPNEIY AMLSNYKYFT IHVKPMNLPK 60 GGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEEKIHVYY AHGQDCPTFV 120 RRCYWLLDKS LEHIVLVHYR ETQELQGSPI TLVHTPVHSH SSSSSDPHAR VLSEELDSGS 180 GNSLTVKNYE QSLHDINTLE WDELLDPNDP INSALGDTVS CFNQQNQGVG KGSSSGGASD 240 MVPMHSSFDH LTNPIATGGN TPGDHRNNVY VQTMGAQMNS DFQRRDSVGV VTGDSDILVN 300 NGLHSQDSFG RWIDGILIDS PGSVIDPLLE TSISSAQDSF VSPATGHIQS PVLEHMFNIT 360 DVSPEWAYSN EKTKILVTGF FHEQYQQFAK CNLLCVCDDV SVSAECIQVG VYRCLIPPHS 420 PGFINLFLSV DGHKPISQIV NLEYRPPVTS LDVKNNWDKF RLQMRLAQLL FSSSKCLNIL 480 SSKVSPNTLK EAKKFAEKVP NFSKAWDNFI NSTENGKTLF PQAQDKLFNL ILRDRLKDWL 540 IEKVIEGSKP TEFDDHGLSL DFRDKHGWTA LHWAAFYGNA KMVAVLLTLG AKPNLVTDPT 600 SANPAGCTAG DLALFRGYEG LAGYLSEKAL VEQFKDMSMA GNASGTLDTS ANDTVYPETL 660 SEEQLFLKDT LAAYRTAADA AARIQVAFRE HSLKVRTKEV EGSSPEEEAR NIVAAMKIQH 720 AFRNFETRKK IKAAARIQDR FRSWKIRRHF LNLRQQTIKI QAAFRGFQVR KQYRKILWSV 780 GVLEKLVLRW RLKRKGFRGL QVAPVEVDQG RESDTEEDFY KASQKQAGER VGRSMGQVKN 840 MFASAKAQEE YHRVKVAHNQ VKLEYEDLFD TDPDSDITS*

Sequence ? help Back to Top

Protein Sequence Length: 880 aa Download sequence Send to blast

MEGGQLVDSN IHGFHTLQDL DVPTIMAEAP SRWLRPNEIY AMLSNYKYFT IHVKPMNLPK  60
GGTIVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEEKIHVYY AHGQDCPTFV  120
RRCYWLLDKS LEHIVLVHYR ETQELQGSPI TLVHTPVHSH SSSSSDPHAR VLSEELDSGS  180
GNSLTVKNYE QSLHDINTLE WDELLDPNDP INSALGDTVS CFNQQNQGVG KGSSSGGASD  240
MVPMHSSFDH LTNPIATGGN TPGDHRNNVY VQTMGAQMNS DFQRRDSVGV VTGDSDILVN  300
NGLHSQDSFG RWIDGILIDS PGSVIDPLLE TSISSAQDSF VSPATGHIQS PVLEHMFNIT  360
DVSPEWAYSN EKTKILVTGF FHEQYQQFAK CNLLCVCDDV SVSAECIQVG VYRCLIPPHS  420
PGFINLFLSV DGHKPISQIV NLEYRPPVTS LDVKNNWDKF RLQMRLAQLL FSSSKCLNIL  480
SSKVSPNTLK EAKKFAEKVP NFSKAWDNFI NSTENGKTLF PQAQDKLFNL ILRDRLKDWL  540
IEKVIEGSKP TEFDDHGLSL DFRDKHGWTA LHWAAFYGNA KMVAVLLTLG AKPNLVTDPT  600
SANPAGCTAG DLALFRGYEG LAGYLSEKAL VEQFKDMSMA GNASGTLDTS ANDTVYPETL  660
SEEQLFLKDT LAAYRTAADA AARIQVAFRE HSLKVRTKEV EGSSPEEEAR NIVAAMKIQH  720
AFRNFETRKK IKAAARIQDR FRSWKIRRHF LNLRQQTIKI QAAFRGFQVR KQYRKILWSV  780
GVLEKLVLRW RLKRKGFRGL QVAPVEVDQG RESDTEEDFY KASQKQAGER VGRSMGQVKN  840
MFASAKAQEE YHRVKVAHNQ VKLEYEDLFD TDPDSDITS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019984.1	0.0	calmodulin-binding transcription activator 5
Refseq	XP_024019986.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2P5F618	0.0	A0A2P5F618_TREOI; Notch
STRING	XP_008223308.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]