PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G018991.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NF-YA

Protein Properties

Length: 305aa MW: 33391.6 Da PI: 10.2446

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G018991.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99	4.7e-31	131	188	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRaklee.ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak++ e+kl k+rkpy+heSRh hAlrRpRg+gGrF HL.SW.v1.0.G018991.1 131 DGPIYVNAKQYHGIIRRRQSRAKAAVlENKL-PKARKPYMHESRHLHALRRPRGCGGRF 188 57********************9879999.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.7E-34	129	191	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.102	130	191	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.8E-26	133	188	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.8E-23	133	155	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.8E-23	165	188	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MAMQTIYLKE HEGLVPNTIG HLSSISSVPW WSAFGSQSVF GDSCDQLKPL SMEKPGTGDL 60 LFSTKHAGRG ADLGPDKGNI TQFTIFPGDG QKSQGTISLQ SSVPEYHARF ELGFGQPMGR 120 IMLPLNLTAD DGPIYVNAKQ YHGIIRRRQS RAKAAVLENK LPKARKPYMH ESRHLHALRR 180 PRGCGGRFLN TKFQNNDKGG RPVAMKLRNG QQLSRSSRSQ SSEVLQSESG TLNSSKEANN 240 SSGSNLSGSE VTSVYSRGEL EHFRINHLGS SFHSVTDMME NSRGIVMPTK WVAATDRSCC 300 NLNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-17	131	196	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015900395.1	1e-161	nuclear transcription factor Y subunit A-10-like
Refseq	XP_024922883.1	1e-161	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A2P5AU49	1e-175	A0A2P5AU49_TREOI; Nuclear transcription factor Y subunit A
STRING	XP_008387119.1	1e-134	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	5e-45	nuclear factor Y, subunit A10