PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018962.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 466aa    MW: 52590.3 Da    PI: 4.9836
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018962.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.1e-081659340
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          +r C+ + + ++++fC  ++ +lC++C  + H        H++v
  HL.SW.v1.0.G018962.1 16 ARACDSCLRVRARWFCAADDAFLCQSCDASVHTAnqlasrHQRV 59
                          578******99*********************556788888876 PP
2CCT675.4e-23407450144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  HL.SW.v1.0.G018962.1 407 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 450
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6941461IPR000315B-box-type zinc finger
PfamPF006435.2E-61659IPR000315B-box-type zinc finger
CDDcd000211.30E-111761No hitNo description
PROSITE profilePS5101715.993407449IPR010402CCT domain
PfamPF062031.1E-17407449IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MISEKKAANA MAGKTARACD SCLRVRARWF CAADDAFLCQ SCDASVHTAN QLASRHQRVR  60
LQTSSFKGSK LGVGDFGSSS PAWLRGFTRR ARTPRNRAAT KQVKKDEEEM NHHHHHRRRE  120
PLLPLVPEMS NEGEEYNRDD DIVQLLNYDG ANEDQDEQLL YRVPIFDPFA AELCNPMSIG  180
DDDDDDHDRC DDQMTESTVA DEDHNDQHRT IMDDQHEVLG FLPSELELAE FAADVENLLG  240
GGGGGGGSLE EDYSCDHEIN GFGIMELLDC KEEEAADARV IKVEEEEDGM LMEASGIGFD  300
GLSDEKFEYE ELTLSGDQVA GGEGKMVNES MKKKKESEIV LRLNYEAVIA AWASQGSPWT  360
TGTRPEVDPD HGWPHYMDMW QTNYSHNESK NLMTRGGKGS NNEVGGREAR VSRYREKRRT  420
RLFAKKIRYE VRKLNAEKRP RMKGRFVKRS SFMSTNNNQL MMTTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417433RRTRLFAKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094760.11e-135zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2P5F9N11e-161A0A2P5F9N1_TREOI; Zinc finger-domain containing protein
STRINGXP_010094760.11e-135(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-71B-box type zinc finger protein with CCT domain