PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G018820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 59856 Da PI: 6.727 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 253.5 | 8.2e-78 | 151 | 529 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevs 88 ++lL cA+a+++g+ ++q+lL l+elas +gd+++Rla++ ++AL ++l++ s+++ ++ + + + s+ + ++l fsevs HL.SW.v1.0.G018820.1 151 EQLLNPCATAITEGNCMRVQHLLYVLHELASLSGDANHRLAFHGLRALTHHLSSsgSSPSFSAPVGSVTFSSAEPRFFQKSLIKFSEVS 239 689**************************************************9444455555556666665555555555555***** PP GRAS 89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLa 166 P++ f + +aN+ Il+ +++e + +Hi+D+++s+G+QWp Ll+aL+ R+ ++pp +RiT ++ +++ + + + rL HL.SW.v1.0.G018820.1 240 PWFAFPNNIANSCILQLLSEEndrtRSLHILDIGVSHGVQWPILLEALSRRSgGPPPLVRITIIAGTDQNndtpfsKGPQGDNFSTRLL 328 ******************9998777889************************55666*****9988666677899889999******** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nses 252 fA+++++++e+n l + l++l+ + ++ +++E+l+V+ +++lh+l +++++er+e+Lk++++++Pk ++++e++ +++ n ++ HL.SW.v1.0.G018820.1 329 CFAKSININLEINRLDNQPLQNLNAQIINSSEDETLIVCAQFRLHHLN---HNTPDERTEFLKTMRKMEPKGIILSEKNieCSCsNCGN 414 **************9999*****************************8...77777889******************98445567889* PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 F+ +f++ +ey + +++s+++ + + r + Er+l++ e+ + ++++g++ +e +ekW er++ aGF l+e+a + ++ll HL.SW.v1.0.G018820.1 415 FASGFSRQVEYLWRFLESTSSAF----KGRESEERRLMEGEAAKGLTNRGEM----NEGKEKWCERMRGAGFVGEGLGEEAIDGGRALL 495 *******************7775....7777788888888899999999988....9******************************** PP GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 rk++ ++++rvee++g + l Wk++p+ ++S W+ HL.SW.v1.0.G018820.1 496 RKYDsNWEMRVEEKDGFVGLWWKGQPVSFCSLWK 529 ****9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.587 | 124 | 508 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-75 | 151 | 529 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MDWLEDSVSF LPSFLDDPYH SAEINGYPWW VESQDIGHDL IHTINTSVYS PSATAIATTT 60 SPPNSTISNH LLLPNSSRKR KSVDGPIPET SQYHHNPRRN HGRQTNQAED GNAAVEEVVA 120 IRKPVGNKRN SAKAAGYNCN NGNNKEGRWA EQLLNPCATA ITEGNCMRVQ HLLYVLHELA 180 SLSGDANHRL AFHGLRALTH HLSSSGSSPS FSAPVGSVTF SSAEPRFFQK SLIKFSEVSP 240 WFAFPNNIAN SCILQLLSEE NDRTRSLHIL DIGVSHGVQW PILLEALSRR SGGPPPLVRI 300 TIIAGTDQNN DTPFSKGPQG DNFSTRLLCF AKSININLEI NRLDNQPLQN LNAQIINSSE 360 DETLIVCAQF RLHHLNHNTP DERTEFLKTM RKMEPKGIIL SEKNIECSCS NCGNFASGFS 420 RQVEYLWRFL ESTSSAFKGR ESEERRLMEG EAAKGLTNRG EMNEGKEKWC ERMRGAGFVG 480 EGLGEEAIDG GRALLRKYDS NWEMRVEEKD GFVGLWWKGQ PVSFCSLWKL NVEGGHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 3e-38 | 147 | 529 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-38 | 147 | 529 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-38 | 147 | 529 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 81 | SRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010086812.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2P5ETQ9 | 0.0 | A0A2P5ETQ9_TREOI; GRAS transcription factor | ||||
STRING | XP_010086812.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-167 | GRAS family protein |
Publications ? help Back to Top | |||
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