PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018770.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YA
Protein Properties Length: 352aa    MW: 38511.8 Da    PI: 8.4946
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018770.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.4e-32174230158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF
  HL.SW.v1.0.G018770.1 174 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGTGGRF 230
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.4E-37172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.322173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.9E-24176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.9E-24207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHQKLNGSSN HMESDANSTE NLQSTIGNSQ PWWGSGIGHQ AISKGLFGGT SMTLSPPKTL  60
NGDLGIQTTN SSPQANQGKP DEGDHGHHRQ DLVQSDGKCE EEQQVSSISP PAMNEYLAPH  120
TQLELSSHSI GCGSYSYSDP YLRGVVPFGS HTLVQAHCLG MPSSRMALPL DMAEEPVYVN  180
AKQYHGILRR RQSRAKAELE KKLIKVRKPY LHESRHLHAM RRARGTGGRF LNTKKTNHTA  240
HNTTPDMNTT TSSAATSTDP IISLSTKPVS SESSSGHCES TELHMQKMHQ AKTYHPNVNG  300
NSCYLPHQGF QLSAYHSLSG DHRIEEGDLI SGQHRDRIMT NGTSHRALTI K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-19174237265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027349.11e-145nuclear transcription factor Y subunit A-1 isoform X1
TrEMBLA0A2P5BKE70.0A0A2P5BKE7_PARAD; Nuclear transcription factor Y subunit A
STRINGXP_010105454.11e-140(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-41nuclear factor Y, subunit A1