PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018744.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 343aa    MW: 38661.2 Da    PI: 5.7939
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018744.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61.1e-27117178159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK++ g+++prsY+rCt++   gC ++k+v+rs++d +++eitY+g H+++
  HL.SW.v1.0.G018744.1 117 MEDGHSWRKYGQKDILGANHPRSYFRCTHRktqGCLATKQVQRSDQDSSILEITYKGYHTCR 178
                           58***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-27110178IPR003657WRKY domain
PROSITE profilePS5081121.241112175IPR003657WRKY domain
SuperFamilySSF1182905.36E-25115178IPR003657WRKY domain
SMARTSM007747.6E-40117179IPR003657WRKY domain
PfamPF031065.6E-26118178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEKKTDFEQK FLINELMEGK ELAKQLMGYL QPSSSHETRD VLVEKILSSY EKALSVLKWD  60
GETKPRQSSP CSFGNNSPKS VIIDQDSNHR DVFKKRKTTV KGEQVKVCVG TGSEGHMEDG  120
HSWRKYGQKD ILGANHPRSY FRCTHRKTQG CLATKQVQRS DQDSSILEIT YKGYHTCRRA  180
SQPAIVASSS LTKMSHFRHP EVVHKDKLKQ SQEKPFSLEV KTEDLDTRED YMFQPFSFAS  240
TPIESEDIPF FSEIIENDFA GAFSSPFISP TTSDSAYFSV SPCHKMSSFG LANSVQTPES  300
DLTEILSAPT SLANSPMCDL DLSLDNVDFE MNFPFDSDEY FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19116178769OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095789.11e-139probable WRKY transcription factor 46
TrEMBLA0A2P5DTC41e-164A0A2P5DTC4_TREOI; WRKY domain containing protein
STRINGXP_010095789.11e-138(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-51WRKY DNA-binding protein 46