PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G018271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | SRS | ||||||||
Protein Properties | Length: 242aa MW: 25347 Da PI: 8.2107 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 221.8 | 1.4e-68 | 22 | 165 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++sCqdCGnqakkdC+h+RCRtCCksrg+dC+thvkstWvpa+krrerqqq++++ss + + ++++kr r+ +++ +ss++l+ HL.SW.v1.0.G018271.1 22 GVSCQDCGNQAKKDCVHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQQQQLSSLQHQ--PHQQPKRLRD---NNALMISSSRLQ- 104 579**********************************************999988655433..4444444444...455555555554. PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++ +e+ ++P+evss+a+frcv+vss++d+++++aYqtav+igGhvfkGiLyd+G+e+ HL.SW.v1.0.G018271.1 105 TNTSSGMEVGNFPAEVSSQALFRCVKVSSMEDNDDQYAYQTAVNIGGHVFKGILYDHGPES 165 4556799****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 25 | No hit | No description |
Pfam | PF05142 | 2.3E-65 | 22 | 164 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.3E-28 | 24 | 66 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.8E-27 | 116 | 163 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MMMRSSSSGG GGAGGGGVVG AGVSCQDCGN QAKKDCVHMR CRTCCKSRGY DCQTHVKSTW 60 VPASKRRERQ QQQQQLSSLQ HQPHQQPKRL RDNNALMISS SRLQTNTSSG MEVGNFPAEV 120 SSQALFRCVK VSSMEDNDDQ YAYQTAVNIG GHVFKGILYD HGPESNYNMG GETSSGGGGG 180 GGGGGNQVQP LDLITVAATA STAAGATEAS PSGAFDPSSL YQQPPLNTYI AGTQFFLPPR 240 S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010113475.1 | 1e-88 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 7e-71 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A2P5DE09 | 1e-107 | A0A2P5DE09_PARAD; Protein SHI RELATED SEQUENCE | ||||
STRING | XP_010113475.1 | 4e-88 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-63 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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