PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018209.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 260aa    MW: 29399.3 Da    PI: 8.4343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018209.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-1481133155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           ++ +hn+ Er RR++iN+ ++ Lr llP  +   + kKls  +++ ++v+Y+  Lq
  HL.SW.v1.0.G018209.1  81 KKLNHNASERDRRKKINDLYSSLRALLPVsD---QTKKLSIPATVSRVVKYVPLLQ 133
                           6789*************************55...8888*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.04980132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-1281135No hitNo description
PfamPF000103.2E-1181133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1181152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-1581150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-886138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MLALSPPLFS NMYTMRGSLE DQNNNFLLRD MIEDIGSEHS SPVLFLNFPT PPVPSDHYQF  60
EIDPSTTPST ATINSDLSMV KKLNHNASER DRRKKINDLY SSLRALLPVS DQTKKLSIPA  120
TVSRVVKYVP LLQEEMEELV RKREELLSRI NSRQQGNTNT FQKVDKIKYT APNSLSSISA  180
TQLNEKEIAV QISTYKLNNN NNKQLSQMLH NFQSDGFSLL HASSFESSRG RVFHNLHLQL  240
VVDSYSMECW ALGGKSVFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922954.16e-79transcription factor ORG2-like isoform X1
TrEMBLA0A2P5ETM53e-91A0A2P5ETM5_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010108530.19e-74(Morus notabilis)
STRINGXP_010108531.18e-73(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56980.19e-42bHLH family protein