PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018190.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 366aa    MW: 40735 Da    PI: 6.9099
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018190.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.82.2e-22245289145
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                           k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ h
  HL.SW.v1.0.G018190.1 245 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILKLMESEGLTIFH 289
                           68****************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-9243289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-18243289IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-14245287IPR006447Myb domain, plants
PfamPF143794.0E-9324348IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNDQKIDYQE RLIQQNSNGV ISDFSFGIGS RRSSQFFGNM GVWVPQSLAA MDEEFRSHHL  60
QNGAVQAKLF SSSSSSTIMS RFETPASAFY ATERCMGFPQ YDSQVGFSSP GSQLISSAHS  120
QTENYSAIED SAHEQSDQPN FDFRNPLPSM AKSQLPFPTS NILGNNGLFG HESNLHVDTS  180
TSVRILPGYN SSYSSPYTQL SFGSHNQEKQ QCQNLSSANN NINSNNNVCI SAVNSALNGP  240
SNSSKTRIRW TQDLHEKFVE CVNRLGGAEK ATPKAILKLM ESEGLTIFHK YRIAKYLPDS  300
AEGKYDKRTS MNDTTQFEAT TGSQIREALQ LQLDVQRRLH EQLEVAKHAL FSEIYSFKLK  360
NKESN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17245296259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024025353.14e-99myb family transcription factor PHL5
TrEMBLA0A2P5BTX81e-132A0A2P5BTX8_PARAD; Octamer-binding transcription factor
STRINGXP_010102554.17e-94(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.23e-51G2-like family protein