PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G018133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HSF | ||||||||
Protein Properties | Length: 338aa MW: 37782.6 Da PI: 4.7288 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.7 | 4.3e-34 | 43 | 134 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k++e++ed++++ ++sws nsfvv+d+++f++ +Lp+yFkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+ HL.SW.v1.0.G018133.1 43 FLTKIFEMVEDPSTDAIVSWSIARNSFVVWDSHKFSTLLLPRYFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQ 122 9********************888*****************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++ikr+++ HL.SW.v1.0.G018133.1 123 KHLLKTIKRRRH 134 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.5E-59 | 39 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.6E-36 | 39 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-33 | 39 | 132 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.7E-30 | 43 | 132 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 43 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 82 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-18 | 94 | 106 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEGVMVKEEE TTTFIAAGSS SSSSSNQSPQ PMEGLHDVGP PPFLTKIFEM VEDPSTDAIV 60 SWSIARNSFV VWDSHKFSTL LLPRYFKHGN FSSFIRQLNT YGFRKVDPDR WEFANEGFLG 120 GQKHLLKTIK RRRHASQSIP HQFGACGIEV DQFGIEAELE RLKRDRAVLM AEIVKLKQQQ 180 HDSVMKVTAM EDRLLLTERK QQQMLTFLAK ALNNPTFIQQ FAQRNKLRGG TGVRKRRLPA 240 AAAVDLEMET LLSAAMDEQS SSSGGNRLGG DGEVIWDELL SEELMLSGNE PEEEGGVLGF 300 GDESAVVVED LIAEPEEWGE EELQELVDQM GYLRSKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-25 | 41 | 132 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-25 | 41 | 132 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 41 | 132 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 41 | 132 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 131 | LKTIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020536555.1 | 1e-141 | heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-115 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A2P5FE00 | 1e-160 | A0A2P5FE00_TREOI; Heat shock transcription factor | ||||
STRING | EMJ24510 | 1e-138 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8225 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-111 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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