PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017891.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 333aa    MW: 36429.9 Da    PI: 6.5624
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017891.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.2e-17227261135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  HL.SW.v1.0.G017891.1 227 CLHCAAEKTPQWRTGPLGPKTLCNACGVRYKSGRL 261
                           99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.2E-8117312IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.281221257IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-15221271IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-14222284No hitNo description
Gene3DG3DSA:3.30.50.106.6E-14222258IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.11E-13226273No hitNo description
PfamPF003204.5E-15227261IPR000679Zinc finger, GATA-type
PROSITE patternPS003440227252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEVPEYLVGG YFGAAAVDFS NEKRQSEQKS SEHFTIDDLL DLSHEEPMVT DGFFDNVAGN  60
STDSSTVTAV DSCNSSISGG EHQFSGNRSF GDSHFSGDLC VPYEDLAELE WLSNFVEDSF  120
SVEKELDTLQ FLSTSSATAN TTKSLTSETS SSSETSRNAS FFQQETPLPG KARSKRSRAA  180
PGDWTTRLLH LVTPNDDGTK PVKTTPSKKK EAGSISNGNS DSSGRKCLHC AAEKTPQWRT  240
GPLGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVSAKHSN SHRKVLELRR QKDFHRAQHQ  300
HFLSQSSIFG VSNGGDDYLI HHHNGPDFRH MI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098128.10.0GATA transcription factor 9
TrEMBLA0A2P5BZX80.0A0A2P5BZX8_PARAD; GATA transcription factor
STRINGXP_010098128.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-70GATA transcription factor 9