PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017721.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 447aa    MW: 48976.2 Da    PI: 6.7979
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017721.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29128189159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs++dp+++eitY+g+H+++
  HL.SW.v1.0.G017721.1 128 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDDDPTIFEITYRGRHTCT 189
                           59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.078123186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-29125190IPR003657WRKY domain
SuperFamilySSF1182904.97E-26127190IPR003657WRKY domain
SMARTSM007743.2E-42128190IPR003657WRKY domain
PfamPF031063.5E-27129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGDWEQKNLL NELTRGKELA GQLQLHLINA SSPSSHETGQ YLVQKILVSY EKALSMLNWP  60
GDHPPQPPPV LQLGMSESPP SLTGSPRSED SDRDQDNKDY MGSRKRKSLP RWTKQVRVSP  120
GMGLEGPLDD GFSWRKYGQK DILGAKYPRG YYRCTHRNVQ GCLATKQVQR SDDDPTIFEI  180
TYRGRHTCTQ APGHVIGSSS TNPTASADQN QEVVALQTTN TNNNIINNFP LEQMSHQHQP  240
QAQEDHILSS LRSGLRVITE GLKNLDDGHS AALIPSFHFA ASSSPTTAAN NNNTNVNMTD  300
ALAVAVAAGG EEQNPAAHRT FSSNNYPMNM IIDDSLMREF SPSFVSPAAS GTNYFSSSVS  360
PQAGHHHHEF GGGIHETFHD RQQDSESDQI AAVISSSAAN TSTIGPDFQF GQGRRTLFLE  420
GCSFMVDSGV LQVKYWKKVR SAKVQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20128188868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097859.11e-125probable WRKY transcription factor 53
TrEMBLA0A2P5BMT01e-150A0A2P5BMT0_PARAD; WRKY domain containing protein
STRINGXP_010097859.11e-124(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-61WRKY family protein