PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HSF | ||||||||
Protein Properties | Length: 377aa MW: 41361.8 Da PI: 6.248 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.2 | 3.5e-35 | 15 | 106 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F++k+y++++d+ +++lisw + +nsf+v+++ +f++k+Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+ HL.SW.v1.0.G017639.1 15 FVMKTYQMVNDPMTDSLISWGHANNSFIVVEPLDFSQKILPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGQ 94 9********************999*****************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++i rkk+ HL.SW.v1.0.G017639.1 95 KHLLKNITRKKH 106 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.4E-54 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.9E-37 | 12 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-34 | 12 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.4E-17 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.1E-30 | 15 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-17 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 54 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-17 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGMEATTSNN VIAPFVMKTY QMVNDPMTDS LISWGHANNS FIVVEPLDFS QKILPAFFKH 60 NNFSSFVRQL NTYGFRKVDP DRWEFANECF LRGQKHLLKN ITRKKHCNSG SSSSSGNRGV 120 PSHTFSASKQ LDSTELDDEE IVMEIARLKQ EQRTLEEELQ GMTKRLETTE RRPQQMMAFL 180 YKVVEDPDIL PRIMNQNKHH LTEKKRRLAI SSATSSNSSG GGGTAPTTAA GTSANNSLKT 240 EDEDEVVASE AGFELESFYH FNQSSSSSPE NPPSRWGDQR ADRFISHDGY YNGFPTINPN 300 SMSAVSSGRV ADSMSVMTSS SMPAPARFVS GYGNGSSSNS NSGQIGYFTG VVAGMESSNP 360 DPAPPPYPFS LFGGGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-26 | 1 | 104 | 16 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-26 | 1 | 104 | 16 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-26 | 1 | 104 | 16 | 129 | Heat shock factor protein 1 |
5hdg_A | 6e-26 | 12 | 104 | 7 | 110 | Heat shock factor protein 1 |
5hdn_A | 6e-26 | 12 | 104 | 7 | 110 | Heat shock factor protein 1 |
5hdn_B | 6e-26 | 12 | 104 | 7 | 110 | Heat shock factor protein 1 |
5hdn_C | 6e-26 | 12 | 104 | 7 | 110 | Heat shock factor protein 1 |
5hdn_D | 6e-26 | 12 | 104 | 7 | 110 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898330.1 | 1e-121 | heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 3e-86 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A2P5CC58 | 1e-171 | A0A2P5CC58_PARAD; Heat shock transcription factor | ||||
STRING | XP_010088821.1 | 1e-116 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8367 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 3e-86 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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