PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 538aa MW: 55454.3 Da PI: 8.9751 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H HL.SW.v1.0.G017630.1 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.5e-05 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ HL.SW.v1.0.G017630.1 145 WKCERCSKKYAVQSDWKAHMKTC 167 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.01E-7 | 68 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0022 | 69 | 91 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.7E-5 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.01E-7 | 140 | 166 | No hit | No description |
SMART | SM00355 | 77 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MGELENSSPM AVSIASAGEA SVSSSGYQTT PVPVDAVLPK KKRNLPGMPD PGAEVIALSP 60 KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TTKEIRKRVY VCPEASCVHH 120 NPARALGDLT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTLF 180 SRRDSFITHR AFCDALAEES ARSQTLAISS DAGNSNVKVA VASPPPPPLT PSASVMSPSL 240 SIQSSELPDN GVGLSPPTPA ATTVLTTNST ATTCSSSNGS STSTVFASIF APSSVAPVPH 300 PSHALANSSF SNLMAGRSHC STTLPTVADL EPTSLSLSTS LYLSNNGGSS LYQTQDQPEH 360 RNFGPSPLQP PAMSATALLQ KAAQMGAAAS NASLLCSFGL TTSTSSSSGK DSLATQWNST 420 QIKPESVAST VAAGLGLGLQ SGGNSGLTDL VMGPSLTFGS QPMTRDLLGL SIGGGGGGGG 480 GVGASTGGLS ALLNSLGGSG GFDITAPSTY GGGGGRSSPG GTWEGQQERK PNGPALL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-36 | 141 | 207 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 8e-36 | 141 | 207 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015884641.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-139 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2P5FZB7 | 0.0 | A0A2P5FZB7_TREOI; TFIIH C1-like domain containing protein | ||||
STRING | XP_010106018.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-114 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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