PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 538aa    MW: 55454.3 Da    PI: 8.9751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017630.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056991123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C+k F r  nL+ H r H
  HL.SW.v1.0.G017630.1 69 FVCEICNKGFQRDQNLQLHRRGH 91
                          89*******************88 PP

2zf-C2H215.64.5e-05145167123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC+ C+k +  +s+ k H++t+
  HL.SW.v1.0.G017630.1 145 WKCERCSKKYAVQSDWKAHMKTC 167
                           58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.01E-76891No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.00226991No hitNo description
PROSITE profilePS5015710.9496991IPR007087Zinc finger, C2H2
SMARTSM003550.0176991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355250110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.01E-7140166No hitNo description
SMARTSM0035577145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGELENSSPM AVSIASAGEA SVSSSGYQTT PVPVDAVLPK KKRNLPGMPD PGAEVIALSP  60
KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TTKEIRKRVY VCPEASCVHH  120
NPARALGDLT GIKKHFCRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGTR EYKCDCGTLF  180
SRRDSFITHR AFCDALAEES ARSQTLAISS DAGNSNVKVA VASPPPPPLT PSASVMSPSL  240
SIQSSELPDN GVGLSPPTPA ATTVLTTNST ATTCSSSNGS STSTVFASIF APSSVAPVPH  300
PSHALANSSF SNLMAGRSHC STTLPTVADL EPTSLSLSTS LYLSNNGGSS LYQTQDQPEH  360
RNFGPSPLQP PAMSATALLQ KAAQMGAAAS NASLLCSFGL TTSTSSSSGK DSLATQWNST  420
QIKPESVAST VAAGLGLGLQ SGGNSGLTDL VMGPSLTFGS QPMTRDLLGL SIGGGGGGGG  480
GVGASTGGLS ALLNSLGGSG GFDITAPSTY GGGGGRSSPG GTWEGQQERK PNGPALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36141207369Zinc finger protein JACKDAW
5b3h_F8e-36141207369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884641.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-139IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2P5FZB70.0A0A2P5FZB7_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010106018.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-114C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]