PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G017572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 39475.4 Da PI: 6.6693 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.3e-11 | 200 | 246 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++N++f L ++P + kK++ ++L A++Y+k+L+ HL.SW.v1.0.G017572.1 200 DHVIAERKRREKLNQKFIALSAVVPGL-----KKMDRTSVLGDAINYVKHLE 246 5999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.577 | 196 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-17 | 200 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.75E-11 | 201 | 250 | No hit | No description |
Pfam | PF00010 | 1.0E-8 | 201 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-16 | 201 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-13 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MEILSAKSLS DELEMNDALS NFMCDQYDMD CLDLIDLEDD GDHHHHEQQL NYFQSSSPDE 60 GNIHTPTICS NYQQNTTTKS SLPVDKERVK FKSSRNWNSR TSAAPIAKMV STTTTSSSAA 120 LISFNNSRSN STATATALVP SSEKNYYLEY WGSTTTATTS DQFYVPKQTQ NCTQKCNNKQ 180 GVRRVGSIST NTRSPLHARD HVIAERKRRE KLNQKFIALS AVVPGLKKMD RTSVLGDAIN 240 YVKHLEERVK TLEEQQEMKT ENHKPVILMK KSLLCTVEDS LSDNDMVMQP LPEIEARVSN 300 KDVLIRIYCE KQYGGCNLAN LLTKIENLHL TIVNTSALPL GSSTIDITIV AQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 200 | 261 | 8 | 70 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 209 | ERKRRE |
2 | 205 | 210 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9T072 | 1e-46 | BH025_ARATH; Transcription factor bHLH25 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-49 | bHLH family protein |